Alchemiscale

Latest version: v0.5.2

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0.5.2

New Contributors
* LilDojd made their first contribution in https://github.com/OpenFreeEnergy/alchemiscale/pull/330

**Full Changelog**: https://github.com/OpenFreeEnergy/alchemiscale/compare/v0.5.1...v0.5.2

0.5.1

This patch release includes small fixes identified from the [0.5.0 release](https://github.com/OpenFreeEnergy/alchemiscale/releases/tag/v0.5.0), as well as changes needed due to the migration of `alchemiscale` to the [OpenFreeEnergy](https://github.com/OpenFreeEnergy) GitHub org. We now also include [`openfe` 1.1.0](https://github.com/OpenFreeEnergy/openfe/releases/tag/v1.1.0) in deployment environments.

Please note that new deployable Docker images for [both `server` and `compute`](https://github.com/orgs/OpenFreeEnergy/packages?repo_name=alchemiscale) are now published to GCR under the `openfreeenergy` namespace instead of the `openforcefield` namespace.

What's Changed
* Set default `claim_limit` back to 1 by dotsdl in https://github.com/OpenFreeEnergy/alchemiscale/pull/289
* Switch pip installs to conda packages where possible, add restart policies to docker-compose containers by dotsdl in https://github.com/OpenFreeEnergy/alchemiscale/pull/288
* Added UNWIND to cancel tasks query by ianmkenney in https://github.com/OpenFreeEnergy/alchemiscale/pull/299
* Deploy openfe 1.1.0, update deployment apparatus for OpenFreeEnergy namespace by dotsdl in https://github.com/OpenFreeEnergy/alchemiscale/pull/308
* Update tutorial notebook for openfe 1.0, latest cinnabar by dotsdl in https://github.com/OpenFreeEnergy/alchemiscale/pull/311
* Prepping prod environments for v0.5.1 release by dotsdl in https://github.com/OpenFreeEnergy/alchemiscale/pull/309


**Full Changelog**: https://github.com/OpenFreeEnergy/alchemiscale/compare/v0.5.0...v0.5.1

0.5.0

**Full Changelog**: https://github.com/openforcefield/alchemiscale/compare/v0.4.0...v0.5.0

0.4.0

New Contributors
* mattwthompson made their first contribution in https://github.com/openforcefield/alchemiscale/pull/253

**Full Changelog**: https://github.com/openforcefield/alchemiscale/compare/v0.3.0...v0.4.0

0.3.0

This release focused on improving users' ability to influence compute effort allocation on their `Task`s, as well as enabling support for large `AlchemicalNetwork`s. This includes:
- the ability to set and get `Task` `priority`, set and get `AlchemicalNetwork` `weight` relative to others, and set and get actioned `Task` `weight`s. These give users several levers of control for getting results of greater interest more quickly. Big thanks to ianmkenney for working on these pieces in detail.
- vast improvement to `AlchemicalNetwork` submission and `AlchemicalNetwork`, `Transformation`, and `ChemicalSystem` retrieval through smarter serialization via use of keyed `dict`s, thanks to work by ianmkenney and dotsdl to solve alchemiscale216:
- users should see very fast submission times compared to previously, even on relatively slow internet connections
- "large" networks (>1000 chemical systems) should be ingestible without issue

What's Changed
* Set minimum for openmmforcefields version in conda envs to 0.12.0 by dotsdl in https://github.com/openforcefield/alchemiscale/pull/193
* Fixing broken CI due to lomap import failures by dotsdl in https://github.com/openforcefield/alchemiscale/pull/196
* Update prod envs to use gufe 0.9.5, openfe 0.14.0 by dotsdl in https://github.com/openforcefield/alchemiscale/pull/197
* Make test env use latest release of openfe and gufe instead of `main` by dotsdl in https://github.com/openforcefield/alchemiscale/pull/203
* Add the `visualize` kwarg to the `create_network` method by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/207
* Add ability to sort `ScopedKey`s by dotsdl in https://github.com/openforcefield/alchemiscale/pull/199
* Remove `return_gufe` kwarg from `AlchemiscaleClient.query_networks` by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/206
* Add client/API getter and setter methods for network weights by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/212
* Add `weight` kwarg to `AlchemiscaleClient.action_tasks` method by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/209
* Add getters and setters for Task priority in AlchemiscaleClient by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/213
* Add `get_network_actioned_tasks` and `get_task_actioned_networks` to `AlchemicaleClient` by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/214
* Network representation optimizations for JSON encoding by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/217
* Optimization to `gufe_to_digraph` to avoid repeated traversals, calls to `GufeTokenizable.to_shallow_dict` by dotsdl in https://github.com/openforcefield/alchemiscale/pull/219
* Added docs on getting and setting AlchemicalNetwork weights, Task actioned weights, and Task priorities by dotsdl in https://github.com/openforcefield/alchemiscale/pull/223
* Attempting to fix seemingly random failures on CI by dotsdl in https://github.com/openforcefield/alchemiscale/pull/224
* Adding KeyedChain class by ianmkenney in https://github.com/openforcefield/alchemiscale/pull/227
* QA tests for impending 0.3.0 release by dotsdl in https://github.com/openforcefield/alchemiscale/pull/226


**Full Changelog**: https://github.com/openforcefield/alchemiscale/compare/v0.2.1...v0.3.0

0.2.1

This is a bugfix release for the v0.2.x release series.

What's Changed
* Added `n_retries` usage for `SynchronousComputeService` by dotsdl in https://github.com/openforcefield/alchemiscale/pull/186
* Added validation guardrail for AlchemicalNetworks with self-Transformations by dotsdl in https://github.com/openforcefield/alchemiscale/pull/189
* Updates for release 0.2.1 by dotsdl in https://github.com/openforcefield/alchemiscale/pull/190


**Full Changelog**: https://github.com/openforcefield/alchemiscale/compare/v0.2.0...v0.2.1

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