Allotropy

Added
- Global definition of calculated data documents representation
- Update bioplex to use _get_date_time

Fixed
- Remove duplicated ct sd and ct se calculated data documents in Quantstudio Design and Analysis adapter
- Remove duplicated quantity mean calculated data documents from AppBio Quantstudio adapter

Changed
- Update multianalyte model minimum_assay_bead_count to be of type "number" insetead of "unitless"
- Update luminex and biorad bioplex to use updated multianalyte model
- Remove inner calculated data documents from AppBio Quantstudio
- Use global definition of calculated data documents in AppBio Quantstudio and Quantstudio Design and Analysis adapters

Deprecated

Removed

Security

Added

- Add Vendor display names
- Added liquid-chromatograpy 2023/09 schema

Fixed

Changed

- Improved schema model generation script to handle more complicated schemas

Deprecated

Removed

- Remove assert in validate_contents

Security

Added

- Add AppBio Quantstudio Design and Analysis adapter
- Add software version to Chemometec Nucleoview
- Biorad Bioplex adapter
- Utils for parsing xml
- Rename the Biorad Bioplex to "Biorad Bioplex Manager"
- Add a utility to remove non-required None values from a dataclass
- Add Beckman PharmSpec adapter

Fixed

- Re-added encoding inference to Beckman VI Cell Blu adapter
- Corrected concentration unit in Lunatic to conform to unit as reported within the source file
- Corrected Luminex xPonent adapter to output one multi analyte profiling document per well.
- Remove duplicated calculated data documents of delta ct se in AppBio Quantstudio

Changed

- Use new plate reader schema in gen5 adapter

Deprecated

Removed

Security

Added

- Added allotropy.testing library, exposing test utils for validating ASM outside of allotropy

Changed

- Exclude tests from sdist

Fixed

- Reverted "add encoding inference to Beckman Vi Cell Blu adapter" - it is causing unexpected behavior in other environments

Fixed

- Add encoding inference to Beckman Vi Cell Blu adapter
- Fix Luminex Xponent adapter to account for the correct instrument file formatting