Autora

This is release reflects revisions from the JOSS review process: https://github.com/openjournals/joss-reviews/issues/6839

What's Changed
* Update mkdocs.yml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/651
* fix: fixed import statement for falsification sampler by musslick in https://github.com/AutoResearch/autora/pull/658
* docs: added note for theorist contributors to consider input parameters as … by musslick in https://github.com/AutoResearch/autora/pull/659
* Doc/closed loop example bandit task by younesStrittmatter in https://github.com/AutoResearch/autora/pull/661
* Update mkdocs.yml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/665
* docs: added complete closed-loop example for psychophysics study by musslick in https://github.com/AutoResearch/autora/pull/668
* docs: fixed links in basic tutorial notebooks by musslick in https://github.com/AutoResearch/autora/pull/670
* docs: fixed missing import statement in notebooks by musslick in https://github.com/AutoResearch/autora/pull/677
* docs: fixed links and added sudo hints by musslick in https://github.com/AutoResearch/autora/pull/676
* docs: minor updates to documentation by musslick in https://github.com/AutoResearch/autora/pull/671
* docs: reorganized behavioral experiment runner doc by musslick in https://github.com/AutoResearch/autora/pull/675
* docs: adapted new structure for states and workflows by musslick in https://github.com/AutoResearch/autora/pull/674
* docs: fixed file naming in examples by musslick in https://github.com/AutoResearch/autora/pull/673
* docs: added cheatsheet by musslick in https://github.com/AutoResearch/autora/pull/672
* doc: Update prolific.md typo fix by musslick in https://github.com/AutoResearch/autora/pull/692
* docs: add experiment runner firebase prolific to code reference by younesStrittmatter in https://github.com/AutoResearch/autora/pull/691
* 689 doc as soon as new version of sweetbean is released update closed loop example bandit task by younesStrittmatter in https://github.com/AutoResearch/autora/pull/690


**Full Changelog**: https://github.com/AutoResearch/autora/compare/v4.1.0...v4.2.0

What's Changed
* Chore make synthetic import consistence by younesStrittmatter in https://github.com/AutoResearch/autora/pull/599
* rebase by younesStrittmatter in https://github.com/AutoResearch/autora/pull/600
* Update CITATION.cff by hollandjg in https://github.com/AutoResearch/autora/pull/602
* Doc add announcement banner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/601
* Update README.md by younesStrittmatter in https://github.com/AutoResearch/autora/pull/605
* doc: added doi by musslick in https://github.com/AutoResearch/autora/pull/606
* doc: add code references for synthetic runners by younesStrittmatter in https://github.com/AutoResearch/autora/pull/604
* added doi by musslick in https://github.com/AutoResearch/autora/pull/607
* rename experiment_runner to run in abstract equation runner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/610
* docs: add CLI introduction, State and Variable user guide entries by hollandjg in https://github.com/AutoResearch/autora/pull/612
* docs: restructure tutorials and examples by hollandjg in https://github.com/AutoResearch/autora/pull/613
* JOSS manuscript by musslick in https://github.com/AutoResearch/autora/pull/618
* update upload artifact in draft-pdf workflow by hollandjg in https://github.com/AutoResearch/autora/pull/620
* fixed minor mistakes by musslick in https://github.com/AutoResearch/autora/pull/619
* Doc/readme joss update by musslick in https://github.com/AutoResearch/autora/pull/623
* docs: remove distinction between poolers and samplers in experimentalist.md by benwandrew in https://github.com/AutoResearch/autora/pull/611
* Feat/experimentalist prediction filter by younesStrittmatter in https://github.com/AutoResearch/autora/pull/624
* fix: Fixed broken links and table of contents by chadcwilliams in https://github.com/AutoResearch/autora/pull/616
* Doc/contributor update jgh by hollandjg in https://github.com/AutoResearch/autora/pull/629
* docs: updated contributor guide by musslick in https://github.com/AutoResearch/autora/pull/627
* Remove all-synthetic from optional dependencies by varun646 in https://github.com/AutoResearch/autora/pull/631
* docs: add equation runner to examples and code reference by younesStrittmatter in https://github.com/AutoResearch/autora/pull/634
* docs: fix Equation Discovery tutorial (dependent on new release of au… by younesStrittmatter in https://github.com/AutoResearch/autora/pull/636
* Update pyproject.toml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/638

New Contributors
* varun646 made their first contribution in https://github.com/AutoResearch/autora/pull/631

**Full Changelog**: https://github.com/AutoResearch/autora/compare/v4.0.0...v4.1.0

What's Changed
* Chore make synthetic import consistence by younesStrittmatter in https://github.com/AutoResearch/autora/pull/599
* rebase by younesStrittmatter in https://github.com/AutoResearch/autora/pull/600
* Update CITATION.cff by hollandjg in https://github.com/AutoResearch/autora/pull/602
* Doc add announcement banner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/601
* Update README.md by younesStrittmatter in https://github.com/AutoResearch/autora/pull/605
* doc: added doi by musslick in https://github.com/AutoResearch/autora/pull/606
* doc: add code references for synthetic runners by younesStrittmatter in https://github.com/AutoResearch/autora/pull/604
* added doi by musslick in https://github.com/AutoResearch/autora/pull/607
* rename experiment_runner to run in abstract equation runner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/610
* docs: add CLI introduction, State and Variable user guide entries by hollandjg in https://github.com/AutoResearch/autora/pull/612
* docs: restructure tutorials and examples by hollandjg in https://github.com/AutoResearch/autora/pull/613
* JOSS manuscript by musslick in https://github.com/AutoResearch/autora/pull/618
* update upload artifact in draft-pdf workflow by hollandjg in https://github.com/AutoResearch/autora/pull/620
* fixed minor mistakes by musslick in https://github.com/AutoResearch/autora/pull/619
* Doc/readme joss update by musslick in https://github.com/AutoResearch/autora/pull/623
* docs: remove distinction between poolers and samplers in experimentalist.md by benwandrew in https://github.com/AutoResearch/autora/pull/611
* Feat/experimentalist prediction filter by younesStrittmatter in https://github.com/AutoResearch/autora/pull/624
* fix: Fixed broken links and table of contents by chadcwilliams in https://github.com/AutoResearch/autora/pull/616
* Doc/contributor update jgh by hollandjg in https://github.com/AutoResearch/autora/pull/629
* docs: updated contributor guide by musslick in https://github.com/AutoResearch/autora/pull/627
* Remove all-synthetic from optional dependencies by varun646 in https://github.com/AutoResearch/autora/pull/631
* docs: add equation runner to examples and code reference by younesStrittmatter in https://github.com/AutoResearch/autora/pull/634
* docs: fix Equation Discovery tutorial (dependent on new release of au… by younesStrittmatter in https://github.com/AutoResearch/autora/pull/636
* Update pyproject.toml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/638
* feat: add bandit-random sampler by younesStrittmatter in https://github.com/AutoResearch/autora/pull/640

New Contributors
* varun646 made their first contribution in https://github.com/AutoResearch/autora/pull/631

**Full Changelog**: https://github.com/AutoResearch/autora/compare/v4.0.0...v4.1.0

What's Changed
* Chore make synthetic import consistence by younesStrittmatter in https://github.com/AutoResearch/autora/pull/599
* rebase by younesStrittmatter in https://github.com/AutoResearch/autora/pull/600
* Update CITATION.cff by hollandjg in https://github.com/AutoResearch/autora/pull/602
* Doc add announcement banner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/601
* Update README.md by younesStrittmatter in https://github.com/AutoResearch/autora/pull/605
* doc: added doi by musslick in https://github.com/AutoResearch/autora/pull/606
* doc: add code references for synthetic runners by younesStrittmatter in https://github.com/AutoResearch/autora/pull/604
* added doi by musslick in https://github.com/AutoResearch/autora/pull/607
* rename experiment_runner to run in abstract equation runner by younesStrittmatter in https://github.com/AutoResearch/autora/pull/610
* docs: add CLI introduction, State and Variable user guide entries by hollandjg in https://github.com/AutoResearch/autora/pull/612
* docs: restructure tutorials and examples by hollandjg in https://github.com/AutoResearch/autora/pull/613
* JOSS manuscript by musslick in https://github.com/AutoResearch/autora/pull/618
* update upload artifact in draft-pdf workflow by hollandjg in https://github.com/AutoResearch/autora/pull/620
* fixed minor mistakes by musslick in https://github.com/AutoResearch/autora/pull/619
* Doc/readme joss update by musslick in https://github.com/AutoResearch/autora/pull/623
* docs: remove distinction between poolers and samplers in experimentalist.md by benwandrew in https://github.com/AutoResearch/autora/pull/611
* Feat/experimentalist prediction filter by younesStrittmatter in https://github.com/AutoResearch/autora/pull/624
* fix: Fixed broken links and table of contents by chadcwilliams in https://github.com/AutoResearch/autora/pull/616
* Doc/contributor update jgh by hollandjg in https://github.com/AutoResearch/autora/pull/629
* docs: updated contributor guide by musslick in https://github.com/AutoResearch/autora/pull/627
* Remove all-synthetic from optional dependencies by varun646 in https://github.com/AutoResearch/autora/pull/631
* docs: add equation runner to examples and code reference by younesStrittmatter in https://github.com/AutoResearch/autora/pull/634
* docs: fix Equation Discovery tutorial (dependent on new release of au… by younesStrittmatter in https://github.com/AutoResearch/autora/pull/636
* Update pyproject.toml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/638
* feat: add bandit-random sampler by younesStrittmatter in https://github.com/AutoResearch/autora/pull/640

New Contributors
* varun646 made their first contribution in https://github.com/AutoResearch/autora/pull/631

**Full Changelog**: https://github.com/AutoResearch/autora/compare/v4.0.0...v4.1.0

What's Changed
* docs: add MIT license badge to README by benwandrew in https://github.com/AutoResearch/autora/pull/552
* Doc/restructuring general tutorial by chadcwilliams in https://github.com/AutoResearch/autora/pull/514
* docs: Add Notebook Tutorial for Equation Discovery by TheLemonPig in https://github.com/AutoResearch/autora/pull/568
* docs: make a documentation page outlining the terminology based on the spreadsheet by benwandrew in https://github.com/AutoResearch/autora/pull/572
* docs: updated docs for installation, theorists, experiment runners, and experimentalists by chadcwilliams in https://github.com/AutoResearch/autora/pull/571
* docs: fix broken links by younesStrittmatter in https://github.com/AutoResearch/autora/pull/576
* docs: update mkdocs settings to allow copying blocks of code / downloading URL-based snippets by hollandjg in https://github.com/AutoResearch/autora/pull/583
* 569 revise tutorial suggestions john by hollandjg in https://github.com/AutoResearch/autora/pull/587
* docs: update workflow documentation by hollandjg in https://github.com/AutoResearch/autora/pull/586
* 544 update dependencies based on new packages post hackathon by younesStrittmatter in https://github.com/AutoResearch/autora/pull/588
* add optional dependency: abstract equation by younesStrittmatter in https://github.com/AutoResearch/autora/pull/593
* Docs nav fix after 400 by younesStrittmatter in https://github.com/AutoResearch/autora/pull/591
* Docs: Revised basic tutorials by chadcwilliams in https://github.com/AutoResearch/autora/pull/584
* fix: Updated nav for basic tutorials by chadcwilliams in https://github.com/AutoResearch/autora/pull/595
* doc: added citation info by musslick in https://github.com/AutoResearch/autora/pull/580
* docs: updated README by musslick in https://github.com/AutoResearch/autora/pull/578

New Contributors
* chadcwilliams made their first contribution in https://github.com/AutoResearch/autora/pull/514

**Full Changelog**: https://github.com/AutoResearch/autora/compare/v3.1.1...v4.0.0

What's Changed
* docs: add functional tutorial by hollandjg in https://github.com/AutoResearch/autora/pull/518
* docs: added logos for funding sources by musslick in https://github.com/AutoResearch/autora/pull/525
* doc: fixes funding logo position and size by musslick in https://github.com/AutoResearch/autora/pull/528
* docs: add details on publishing via Github Actions by younesStrittmatter in https://github.com/AutoResearch/autora/pull/531
* docs: add badges by hollandjg in https://github.com/AutoResearch/autora/pull/532
* docs: add note to contributor documentation for updating and releasing new versions of contributed modules. by benwandrew in https://github.com/AutoResearch/autora/pull/535
* ci: standardize repository issue labels with label syncer by benwandrew in https://github.com/AutoResearch/autora/pull/534
* docs: update license to MIT by benwandrew in https://github.com/AutoResearch/autora/pull/537
* feat: add leverage sampler by benwandrew in https://github.com/AutoResearch/autora/pull/539
* docs: create lists of implemented components by benwandrew in https://github.com/AutoResearch/autora/pull/540


**Full Changelog**: https://github.com/AutoResearch/autora/compare/v3.1.0...v3.1.1

What's Changed
* docs: add white bg to overview by younesStrittmatter in https://github.com/AutoResearch/autora/pull/428
* Docs add tutorials by younesStrittmatter in https://github.com/AutoResearch/autora/pull/429
* chore: remove IDE files by hollandjg in https://github.com/AutoResearch/autora/pull/431
* Revamp motivation section of top-level index.md by benwandrew in https://github.com/AutoResearch/autora/pull/432
* ci: add trigger to publish every night by benwandrew in https://github.com/AutoResearch/autora/pull/438
* Make theorist language more general by benwandrew in https://github.com/AutoResearch/autora/pull/440
* doc: modified main contributor doc by musslick in https://github.com/AutoResearch/autora/pull/441
* doc: theorist module contribution by musslick in https://github.com/AutoResearch/autora/pull/442
* Update mkdocs.yml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/443
* Update mkdocs.yml by benwandrew in https://github.com/AutoResearch/autora/pull/444
* Doc/generalize tutorials by musslick in https://github.com/AutoResearch/autora/pull/447
* Update theorist-module.md by benwandrew in https://github.com/AutoResearch/autora/pull/448
* Doc: extension of contribution documentation by musslick in https://github.com/AutoResearch/autora/pull/445
* update doc by younesStrittmatter in https://github.com/AutoResearch/autora/pull/449
* Update mkdocs.yml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/451
* 446 add documentation for experiment runner module contribution by younesStrittmatter in https://github.com/AutoResearch/autora/pull/450
* Add content to index.md for tutorials by benwandrew in https://github.com/AutoResearch/autora/pull/454
* 455 docs make folder structure consitent with nav in mkdocs.yml by younesStrittmatter in https://github.com/AutoResearch/autora/pull/456
* docs: change header case by younesStrittmatter in https://github.com/AutoResearch/autora/pull/458
* docs: update button to open in colab by hollandjg in https://github.com/AutoResearch/autora/pull/472
* Docs/remove deprecated plugin by hollandjg in https://github.com/AutoResearch/autora/pull/473
* docs: add links to tutorials on landing page for documentation by benwandrew in https://github.com/AutoResearch/autora/pull/463
* Docs: add code reference by hollandjg in https://github.com/AutoResearch/autora/pull/471
* docs: update documentation to reflect new structure with code references by younesStrittmatter in https://github.com/AutoResearch/autora/pull/477
* Elaborate on PR process for contributions by benwandrew in https://github.com/AutoResearch/autora/pull/475
* docs: add nb-clean pre-commit-hook by hollandjg in https://github.com/AutoResearch/autora/pull/480
* docs: attach images to notebooks by hollandjg in https://github.com/AutoResearch/autora/pull/474
* build: remove empty src directory – replace with explicit instruction… by hollandjg in https://github.com/AutoResearch/autora/pull/481
* docs: add documentation on how to set up a online experiment via Fire… by younesStrittmatter in https://github.com/AutoResearch/autora/pull/479
* docs: test building before merge by hollandjg in https://github.com/AutoResearch/autora/pull/486
* Clean up documentation headings globally in parent package by benwandrew in https://github.com/AutoResearch/autora/pull/485
* docs: add mention of style guide in top-level of contributor guide by benwandrew in https://github.com/AutoResearch/autora/pull/489
* ci: add push-to-main-branch as event to trigger publishing documentation by benwandrew in https://github.com/AutoResearch/autora/pull/491
* 484 everywhere in the documentation where we describe the venv setup including contributor setup we should add that venv should specify the python version eg 39 by younesStrittmatter in https://github.com/AutoResearch/autora/pull/487
* docs: strong title cases in all headings by younesStrittmatter in https://github.com/AutoResearch/autora/pull/493
* doc: fixed minor typos by musslick in https://github.com/AutoResearch/autora/pull/494
* docs: include tutorial for online experiment by younesStrittmatter in https://github.com/AutoResearch/autora/pull/495
* Update index.md by younesStrittmatter in https://github.com/AutoResearch/autora/pull/498
* Update Theorist.ipynb by younesStrittmatter in https://github.com/AutoResearch/autora/pull/499
* docs: update page names in tutorials by benwandrew in https://github.com/AutoResearch/autora/pull/500
* feat: added mixture experimentalist contribution by blinodelka in https://github.com/AutoResearch/autora/pull/461
* 503 fix broken links by younesStrittmatter in https://github.com/AutoResearch/autora/pull/504
* fix: fixed unordered lists by musslick in https://github.com/AutoResearch/autora/pull/508
* docs: added introductory tutorial by musslick in https://github.com/AutoResearch/autora/pull/507
* doc: re-arranged outline in contributor guide by musslick in https://github.com/AutoResearch/autora/pull/509
* docs: add installation page to main documentation by benwandrew in https://github.com/AutoResearch/autora/pull/505

New Contributors
* younesStrittmatter made their first contribution in https://github.com/AutoResearch/autora/pull/428
* blinodelka made their first contribution in https://github.com/AutoResearch/autora/pull/461

**Full Changelog**: https://github.com/AutoResearch/autora/compare/v3.0.1...v3.1.0

What's Changed
* docs: update image path by hollandjg in https://github.com/AutoResearch/autora/pull/425
* docs: add site url (fixes links) by hollandjg in https://github.com/AutoResearch/autora/pull/426


**Full Changelog**: https://github.com/AutoResearch/autora/compare/v3.0.0...v3.0.1