Bento-tools

Latest version: v2.1.3

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2.1.3

What's Changed
- upgrade major dependencies by ckmah in https://github.com/ckmah/bento-tools/pull/141
- improved SpatialData support, especially multitables and saving metadata by ckmah in 140
- improved handling edge cases for `bt.tl.lp()` and downstream methods by dylanclam12 in https://github.com/ckmah/bento-tools/pull/138
- many bug fixes

**Full Changelog**: https://github.com/ckmah/bento-tools/compare/2.1.2...2.1.3

2.1.2

What's Changed
* v2.1.2 by ckmah in https://github.com/ckmah/bento-tools/pull/133
* bump version by ckmah in https://github.com/ckmah/bento-tools/pull/134


**Full Changelog**: https://github.com/ckmah/bento-tools/compare/2.1.1...2.1.2

2.1.1

What's Changed

- Improve robustness and runtime performance after initial SpatialData refactor, streamline test data 128
- re-add test code coverage 126
- bugs 127 125

**Full Changelog**: https://github.com/ckmah/bento-tools/compare/v2.1-alpha...2.1.1

2.1

What's Changed
- SpatialData integration and more!

**Full Changelog**: https://github.com/ckmah/bento-tools/compare/v2.1-alpha...2.1

2.1alpha

What's Changed
* patch bugs affecting tutorials by ckmah in https://github.com/ckmah/bento-tools/pull/98
* V2.0 by ckmah in https://github.com/ckmah/bento-tools/pull/96
* bump version by ckmah in https://github.com/ckmah/bento-tools/pull/99
* RNAflux improvements by ckmah in https://github.com/ckmah/bento-tools/pull/102
* unit tests and plotting bugs by ckmah in https://github.com/ckmah/bento-tools/pull/106
* add rich and bump version by ckmah in https://github.com/ckmah/bento-tools/pull/107


**Full Changelog**: https://github.com/ckmah/bento-tools/compare/v2.0.0a0...v2.1-alpha

2.0.0

What's Changed

ckmah in https://github.com/ckmah/bento-tools/pull/96
> Major release aligned with version 2 of the preprint 🎉
>
> Overall goals for this upgrade:
> - 3 core analyses: RNAforest (spatial patterns), RNAflux (spatial gradient embedding), Colocation analysis (cell, gene and compartment aware)
> - break up monolith plotting function into separate functions for plotting each "layer"
> - speed up shape and point feature computations
> - more granular tutorials
> - technical docs
> - general stability

**Full Changelog**: https://github.com/ckmah/bento-tools/compare/v1.0.1...v2.0.0

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