Binchicken

What's Changed
* Add doctave-based docs by AroneyS in https://github.com/AroneyS/binchicken/pull/101
* bin: Improve help msgs. by wwood in https://github.com/AroneyS/binchicken/pull/102
* Improve snakemake retry behaviour by AroneyS in https://github.com/AroneyS/binchicken/pull/105
* Reduce `update` required inputs by AroneyS in https://github.com/AroneyS/binchicken/pull/106
* fix COASSEMBLY_SAMPLES causing lengths to get out of sync by AroneyS in https://github.com/AroneyS/binchicken/pull/107
* Improve Aviary running by AroneyS in https://github.com/AroneyS/binchicken/pull/108
* Notify if any sample skipped by AroneyS in https://github.com/AroneyS/binchicken/pull/109
* Update improvements by AroneyS in https://github.com/AroneyS/binchicken/pull/110

New Contributors
* wwood made their first contribution in https://github.com/AroneyS/binchicken/pull/102

**Full Changelog**: https://github.com/AroneyS/binchicken/compare/v0.10.3...v0.10.4

What's Changed
* Add links and citation by AroneyS in https://github.com/AroneyS/binchicken/pull/100


**Full Changelog**: https://github.com/AroneyS/binchicken/compare/v0.10.2...v0.10.3

Fix pypi upload

- New release for Zenodo
- Increase memory for rules with retries

**Full Changelog**: https://github.com/AroneyS/binchicken/compare/v0.10.0...v0.10.1

What's Changed
* Quality of life improvements by AroneyS in https://github.com/AroneyS/binchicken/pull/86
* Rename `--aviary-[gtdbtk, checkm2]-dir` args to `--aviary-[gtdbtk, checkm2]-db`
* Add database env variables to `ibis build` (SingleM, CheckM2, GTDBtk)
* Minimise standard workflow arguments
* Removed `--no-genomes` argument and made that the default
* Set max size to 50Gbp unless single-assembly
* Add Aviary build to Ibis build by AroneyS in https://github.com/AroneyS/binchicken/pull/89
* Snakefile improvements by AroneyS in https://github.com/AroneyS/binchicken/pull/93
* Update dependencies by AroneyS in https://github.com/AroneyS/binchicken/pull/94
* Improve genome loading by AroneyS in https://github.com/AroneyS/binchicken/pull/95
* Change name to binchicken by AroneyS in https://github.com/AroneyS/binchicken/pull/96

Breaking changes
* Name change to binchicken
* `--coassemble-output` now refers to `--output` dir from coassemble command instead of referring to the `coassemble` subfolder within that output dir
* Rename `--aviary-[gtdbtk, checkm2]-dir` args to `--aviary-[gtdbtk, checkm2]-db`
* Removed `--no-genomes` argument and made that the default
* Set max size to 50Gbp unless single-assembly


**Full Changelog**: https://github.com/AroneyS/binchicken/compare/v0.9.6...v0.10.0

What's Changed
* Add input to restrict coassembly samples by AroneyS in https://github.com/AroneyS/ibis/pull/71
* Add SingleM metapackage env var by AroneyS in https://github.com/AroneyS/ibis/pull/75
* Update Aviary env by AroneyS in https://github.com/AroneyS/ibis/pull/78
* Fix using max recovery samples with single assembly by AroneyS in https://github.com/AroneyS/ibis/pull/79


**Full Changelog**: https://github.com/AroneyS/ibis/compare/v0.9.5...v0.9.6