BIOMERO changes:
-
- Bugfixes:
- Added support for hyphens "-" in workflow parameters (e.g. in file suffix for cellprofiler measurements)
BIOMERO Scripts changes:
-
- Bugfixes:
- Now actually fail the whole workflow (via the event sourced database, for the dashboard) when subtasks encounter errors (e.g. slurm job failed)
- Fix attaching resulting images as attachment to the original image; was dependent on wrong variable
- New Features:
- Add workflow ID to the image export folder filename (instead of timestamp)
- Add workflow ID to the resulting image name iff we attach it (so you can find it in OMERO); not if we add it to a dataset, then user still controls the name
- Add workflow ID to the resulting CSV file name when we attach it (so you can find it in OMERO)
- Add workflow ID to the resulting description of images/datasets/logfile that we create in OMERO (not just 'job id')
**Full Changelog**: https://github.com/NL-BioImaging/biomero-scripts/compare/v2.0.0-alpha.4...v2.0.0-alpha.5