Biotea

Latest version: v2.0.0

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2.0.0

This version introduces a few bugfixes and improvements, plus the ability to specify the name of the column in the input matrices for both `biotea analyze` and `biotea annotate` to something other than `probe_id`.

You can customize this in the config file for the `analyze` module or directly in the CLI for `annotate`.

This version of BioTEA is only compatible with `2.*.*` containers.

1.1.1

This release fixes a bug with the new versions of Python (notably Python 3.12), where the importlib package was changed.
This just affected the 'biotea initalize' script, as the internal yaml configuration could not be found.

Thank you for using BioTEA! Please open an issue for any problems you encounter.

1.1.0

This version is the first one without the attached BioTEA-box. It was moved [to its own repository](https://github.com/CMA-Lab/bioTEA-box) to allow the two aspects of the projects to diverge slightly from each other.

Fixed
- Fixed a bug during version compatibility checks where the parsing of the `latest` version would fail.

1.0.4

This version fixes a bug where the `LegacyVersion` of the package `packaging` was deprecated and removed. We now use an older version of `packaging`.

1.0.3

This version fixes a critical bug when using the `batches` variable. See issue 5 for more details.

1.0.2

This is the first post-release version, and it is aimed at fixing bugs and adding polish.

Added
- Added some actual info to `biotea info`

Fixed
- Fixed some RankProd bugs;
- Fixed some errors while comparing version info
- [MAJOR] Updated to Docker API version 2. This caused all biotea commands to error out.
- Fixed 2 .
- Fixed a bug where user-set options would fail to be loaded.

**Full Changelog**: https://github.com/CMA-Lab/bioTEA/compare/1.0.1...1.0.2

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