Botsynthesis

Latest version: v4.0.1

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5.0

4.0

Able to be imported into another program, no UI

2.0

processed the sequences in parallel (for speed)
https://github.com/ArsenicMeatball/BOTS_development/commit/c19653eb32cb8ab640bc2c382145008c37dcb103
Pros
- able to, sometimes, find a sequence that would be synthesizable
- most functions were solid, and tested
Cons
- extremely slow, too much multiprocessing
- would result in many sequences
- no UI

1.0

Locally ran Django application to optimize biobricks for synthesis
https://2019.igem.org/Team:Calgary/BOT
https://github.com/iGEMCalgary/BOTs/commit/c057d227f9905d0b6ed3b27e35d1523a0852f4ce
Pros
- able to, sometimes, find a sequence that would be synthesizable
Cons
- extremely slow
- would result in many sequences
- poor coding practices
- integrated into django very poorly

0.1

https://github.com/ArsenicMeatball/codon-harmony
pros
- handled numerous aspects of the codon deficiencies
- solid coding practices
cons
- applied changes in a circular manner resulting in ever rotating improvements (removing duplicates causes gc richness, removing gc richness causes duplicates)
- rarely worked
- slow, only multiprocessed per sequence
- no UI

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Has known vulnerabilities

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