Brainglobe-workflows

What's Changed
* Avoid caching `pip` dependencies by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/124
* Replace `imio` with `brainglobe-utils` by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/128
* Schedule tests to run weekly by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/127
* Notify slack on scheduled test failure by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/130
* Added wheel to additional_dependencies in pre-commit-config.yaml by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/132
* Replaced NIU upload action with separate steps by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/133
* Use pypa/gh-action-pypi-publish stable release v1 by lochhh in https://github.com/brainglobe/brainglobe-workflows/pull/134
* Update Python versions to adhere to SPEC 0 by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/136
* Update cellfinder.py to import train_yaml by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/138
* Pin brainglobe-utils version by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/139

New Contributors
* lochhh made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/134

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.4.0...v1.4.1

What's Changed
* Slim dependencies by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/119
* Add brainglobe-atlasapi to `latest-github-requirements` by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/120
* Standardise contact information in readme by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/121
* Update dependencies by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/123


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.3.0...v1.4.0

What's Changed
* Update caching by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/109
* Increase benchmarks timeout by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/111
* Remove calls to TensorFlow related cellfinder functions by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/112
* Update brainmapper to match cellfinder release candidate by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/113
* Force cpu usage on macos-latest runners by IgorTatarnikov in https://github.com/brainglobe/brainglobe-workflows/pull/114
* Define two asv configurations for pip and latest-github dependencies by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/110
* Update default batch size to 64 by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/116
* Update supported Python versions and remove cibuildwheel config by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/117
* pin to pytorch-version of cellfinder by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/118

New Contributors
* IgorTatarnikov made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/112

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.2.0...v1.3.0

What's Changed
* Add codecov token by K-Meech in https://github.com/brainglobe/brainglobe-workflows/pull/91
* Update gitignore by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/92
* Remove entry point for cellfinder workflow by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/93
* Cache cellfinder model in CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/97
* naive attempt at fixing HDF5 by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/100
* Run cellfinder benchmarks on small data by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/94
* Cache atlases in CI for brainmapper tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/101
* Cache for cellfinder workflow tests by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/102
* Check benchmarks on CI by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/96
* Rename `cellfinder_core` to `cellfinder` by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/95
* Support single z-stack tif file for input by matham in https://github.com/brainglobe/brainglobe-workflows/pull/88
* Update use of cellfinder.core download cli by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/107
* Follow numpy structure and add asv-specific README by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/104
* Update use of brainglobe-utils image IO by adamltyson in https://github.com/brainglobe/brainglobe-workflows/pull/108

New Contributors
* K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/91

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.5...v1.2.0

What's Changed
* update atlas api import with new name by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/86
* Replace source_custom_config_cellfinder with newer function by matham in https://github.com/brainglobe/brainglobe-workflows/pull/89

New Contributors
* matham made their first contribution in https://github.com/brainglobe/brainglobe-workflows/pull/89

**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.4...v1.1.5

What's Changed
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/brainglobe-workflows/pull/81
* brainglobe_space name change by sfmig in https://github.com/brainglobe/brainglobe-workflows/pull/82


**Full Changelog**: https://github.com/brainglobe/brainglobe-workflows/compare/v1.1.3...v1.1.4