Bx-python

Breaking Changes
* Remove psyco, it is only available for Python <= 2.6 by mr-c and tillea in https://github.com/bxlab/bx-python/pull/96
* Remove unused ``bx.cookbook.progress_bar`` module

Bug Fixes
* Fix import statement s/cookbook/bx.cookbook/ by mr-c and tillea in https://github.com/bxlab/bx-python/pull/95
* Decode C string to str. Fix https://github.com/galaxyproject/galaxy/issues/18806 .

Other Changes
* Add support for Python 3.13
* Remove unneeded build-system requirement ``wheel``
* Stop vendoring argparse and pyparsing
* Add linting with ruff and several ruff plugins

**Full Changelog**: https://github.com/bxlab/bx-python/compare/v0.12.0...v0.13.0

What's Changed
* Add pytest 8.x compatibility by mr-c in https://github.com/bxlab/bx-python/pull/92
* Allow post install testing by mr-c in https://github.com/bxlab/bx-python/pull/93
* Fix include for `strlen()` by mr-c in https://github.com/bxlab/bx-python/pull/94
* Re-enable doctesting of C extension modules by nsoranzo in https://github.com/bxlab/bx-python/commit/2e46af6b2954fec38ad1bc85839d812a2dd0919d
* Support NumPy 2.0 by nsoranzo in https://github.com/bxlab/bx-python/commit/335ca029d000d3f030f45ffe8a4e3c4a4b8f729c
* Build musllinux wheels for Python 3.9-3.11. Skip PyPy wheels on i686 by nsoranzo in https://github.com/bxlab/bx-python/commit/fba2c50c7b1d2dcb3f9619c50951f63783ec7b02

New Contributors
* mr-c made their first contribution in https://github.com/bxlab/bx-python/pull/92

**Full Changelog**: https://github.com/bxlab/bx-python/compare/v0.11.0...v0.12.0

Breaking Changes
- Added support for Python 3.12.
- Dropped support for Python 3.7.

Other Changes
- Added musllinux wheels for Python 3.12.
- Restore docs building on https://bx-python.readthedocs.io/

Breaking Changes
* Added support for Python 3.11.
* Added arm64 macOS wheels. Dropped PyPy 3.7 Linux wheels and all PyPy 3.8 wheels.

Deprecations
* Support for Python 3.7 is deprecated.

Other Changes
* From NumPy 1.24.0 ``np.float`` is deprecated by lldelisle in https://github.com/bxlab/bx-python/pull/90
* Fix exception message by lldelisle in https://github.com/bxlab/bx-python/pull/89
* Fix compilation with Cython 3 by mvdbeek in https://github.com/bxlab/bx-python/pull/91


**Full Changelog**: https://github.com/bxlab/bx-python/compare/v0.9.0...v0.10.0

Breaking Changes
* Index `TwoBitFile` sequences by `str` not `bytes` by nsoranzo in https://github.com/bxlab/bx-python/pull/85
* Skip building also other musllinux wheels by nsoranzo in https://github.com/bxlab/bx-python/pull/86

Other Changes
* Fix new E275 linting error by nsoranzo in https://github.com/bxlab/bx-python/pull/84
* Upgrade GitHub Actions by cclauss in https://github.com/bxlab/bx-python/pull/83
* Format Python code with `black` and `isort` by nsoranzo in https://github.com/bxlab/bx-python/pull/87

New Contributors
* cclauss made their first contribution in https://github.com/bxlab/bx-python/pull/83

**Full Changelog**: https://github.com/bxlab/bx-python/compare/v0.8.13...v0.9.0

What's Changed
* Improve MAF handling by lldelisle in https://github.com/bxlab/bx-python/pull/77
* Drop support for Python 3.6, add 3.10 by nsoranzo in https://github.com/bxlab/bx-python/commit/1283016a55ac4e8ced6dc623215ea6d19a18d0a2

New Contributors
* lldelisle made their first contribution in https://github.com/bxlab/bx-python/pull/77

**Full Changelog**: https://github.com/bxlab/bx-python/compare/v0.8.12...v0.8.13