Carveme

Latest version: v1.6.2

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1.6.0

This release introduces support for the open source SCIP solver.

1.5.2

It is now possible to select a solver using `--solver`. Only **cplex** and **gurobi** are available at the moment.

1.5.1

Solves issue with spontaneous/diffusion reactions getting excluded from the models.

1.5

- Updated internal database to BiGG 1.6
- Rebuild and curated universal model (increased from 2383 to 2861 metabolites and from 4343 to 5532 reactions)
- Improved all element annotations (MEMOTE score increased from ~30% to ~80%)

Current benchmark scores:

- Biolog MCC = 0.255
- Essentiality MCC = 0.483

1.5.0

1.4.1

Solves a few problems, including installation issues and two bugs introduced in gapfill and merge_community in the last release.

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