Ccsmeth

using logging instead of print/sys.stderr.write

bug fixes

change feature QUAL to SNratio, didn't work though?

hid '--n_vocab' and '--n_embed' in model params

add attbigru2s2/attbilstm2s2 models

update new version of pretrained model params

handle ValueError when fetching bam items in call_freqb module

optimieze call_mods module, faster generating of modbam file

replace 'numpy.float' by 'float" in extract_features and call_mods modules

more robust operation for MM/ML tags

update the call_mods model (v1 to v2), use shared params for both rnn and attention

update aggregate model (v2 to v2p)