Cellacdc

Latest version: v1.4.31

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1.4.31

This is a minor release to address a few bugs.

**Full Changelog**: https://github.com/SchmollerLab/Cell_ACDC/compare/v1.4.30...v1.4.31

1.4.30

It's finally possible to easily **export to video or image directly from the GUI**

Video can be generated from z-stacks or timelapse data. You can also add a timestamp to each frame.

What's Changed
* Feat: Added ReatTheDocs tutorial by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/406
* Feat: Overhaul of docs; Addition of bdir to docs and updating format to .rst; Update of README to .rst and content; Addition of Tooltip to docs with extraction to the program by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/414
* Feat: pomBseen tracker by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/425
* Feat: Updated GUI element in segmentation module, closes 435 by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/436
* Feat: added pomBseen_nuclear segmentation model by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/440
* CellACDC_normal_division by Teranis in https://github.com/SchmollerLab/Cell_ACDC/pull/456


**Full Changelog**: https://github.com/SchmollerLab/Cell_ACDC/compare/v1.4.0...v1.4.30

1.4.0

Build and installation

- Default installation is headless
- Use of `qtpy`, see 321
- Default to `PyQt6`, see 321

New trackers

- [TAPIR](https://deepmind-tapir.github.io/) by DeepMind

New features

- Module 3 GUI: remove all objects outside of a selected segmentation mask, see 373
- Module 3 GUI: add points manually with auto-pilot to zoom to objects, see 340
- Module 3 GUI: improvements to cell cycle annotations, see 303 and 299
- Utilities: select which columns to include in the 'Concatenate acdc output tables' utility, see 364

UI/UX improvements

- Dark/light mode toggle with better colours for the icons (e.g., 360)

1.4.0rc.1

1.3.0

New segmentation models

- [Segment Anything Model (SAM)](https://github.com/facebookresearch/segment-anything)
- [DeepSea](https://www.biorxiv.org/content/10.1101/2021.03.10.434806v1)

New trackers

- [DeepSea](https://www.biorxiv.org/content/10.1101/2021.03.10.434806v1)

UI/UX improvements

- New quick settings widget (bottom-left GUI)
- Speed improvement: text annotations using pyqtgraph.ScatterPlotItem instead of LabelItem
- Speed improvement: draw contours with opencv

v1.2.4-rc.29a
Minor bug fixes and UI/UX improvements. Added citation file to improve readability of citation from Zenodo

1.2.4rc.29

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