Cellmap-models

Latest version: v0.1.0

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2024.08.06

Cellpose models used for nuclei segmentation of mouse tissues.

**jrc_mus-granule-neurons-1_nuc_cp:** Cellpose was trained on nuclei from 12 2D slices from jrc_mus-granule-neurons-1.
**jrc_mus-granule-neurons-2_nuc_cp:** Cellpose was trained on nuclei from 10 2D slices from jrc_mus-granule-neurons-2.
**jrc_mus-granule-neurons-3_nuc_cp:** Cellpose was trained on nuclei from 21 2D slices from jrc_mus-granule-neurons-3.
**jrc_mus-guard-hair-follicle_nuc_cp:** Cellpose was trained on nuclei from 22 2D slices from jrc_mus-guard-hair-follicle.
**jrc_mus-kidney_nuc_cp:** Cellpose was trained on nuclei from 28 2D slices from jrc_mus-kidney.
**jrc_mus-kidney-2_nuc_cp:** Cellpose was trained on nuclei from 38 2D slices from jrc_mus-kidney-2.
**jrc_mus-liver-2_nuc_cp:** Cellpose was trained on nuclei from 29 2D slices from jrc_mus-liver-2.
**jrc_mus-meisnner-corpuscle-1_nuc_cp:** Cellpose was trained on nuclei from 21 2D slices from jrc_mus-meisnner-corpuscle-1.
**jrc_mus-meisnner-corpuscle-2_nuc_cp:** Cellpose was trained on nuclei from 27 2D slices from jrc_mus-meisnner-corpuscle-2.
**jrc_mus-pacinian-corpuscle_nuc_cp:** Cellpose was trained on nuclei from 31 2D slices from jrc_mus-pacinian-corpuscle.
**jrc_mus-pancreas-1_nuc_cp:** Cellpose was trained on nuclei from 34 2D slices from jrc_mus-pancreas-1.
**jrc_mus-pancreas-2_nuc_cp:** Cellpose was trained on nuclei from 30 2D slices from jrc_mus-pancreas-2.
**jrc_mus-pancreas-3_nuc_cp:** Cellpose was trained on nuclei from 4 2D slices from jrc_mus-pancreas-3.



Cellpose models used for nuclei segmentation of fly tissues
**jrc_fly-mb-z0419-20:** Cellpose was trained on nuclei from 32 2D slices from jrc_fly-mb-z0419-20.

**Full Changelog**: https://github.com/janelia-cellmap/cellmap-models/commits/2024.08.06

What's Changed
* Latest by rhoadesScholar in https://github.com/janelia-cellmap/cellmap-models/pull/2
* Update tests.yaml by rhoadesScholar in https://github.com/janelia-cellmap/cellmap-models/pull/3
* Load checkpoints by mzouink in https://github.com/janelia-cellmap/cellmap-models/pull/4
* Add cellpose[gui] as a main dependency by rhoadesScholar in https://github.com/janelia-cellmap/cellmap-models/pull/5
* Cosem classes channels by mzouink in https://github.com/janelia-cellmap/cellmap-models/pull/6

New Contributors
* rhoadesScholar made their first contribution in https://github.com/janelia-cellmap/cellmap-models/pull/2
* mzouink made their first contribution in https://github.com/janelia-cellmap/cellmap-models/pull/4

**Full Changelog**: https://github.com/janelia-cellmap/cellmap-models/compare/2024.03.08...2024.08.06

2024.03.08

Cellpose models used for nuclei and ecs segmentation of mouse tissues.

**jrc_mus-epididymis-1_nuc_cp:**
**jrc_mus-epididymis-2_nuc_cp:**
**jrc_mus-heart-1_ecs_cp:**
**jrc_mus-heart-1_nuc_cp:**
**jrc_mus-hippocampus-1_nuc_cp:**
**jrc_mus-kidney-3_nuc_cp:**
**jrc_mus-liver-3_nuc_cp:**
**jrc_mus-pancreas-4_nuc_cp:** Cellpose was trained on nuclei from 17 2D slices from jrc_mus-pancreas-4.
**jrc_mus-skin-1_nuc_cp:**
**jrc_mus-thymus-1_nuc_cp:**


**Full Changelog**: https://github.com/janelia-cellmap/cellmap-models/commits/2024.03.08

**Full Changelog**: https://github.com/janelia-cellmap/cellmap-models/commits/2024.03.08

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