Chessanalysispipeline

After merge EDD-fall2023

What's Changed
* add: `CHAP.version` attribute by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/89
* Make `FMBLinearScanParser` compatible with both old and new flymesh argument orders by keara-soloway in e9f07b02c25085f25ce599100a651087baa6e351
* Add tomo calibration rotation axis tool by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/90
* Add `H5Reader`, `AnimationProcessor`, `AnimationProcessor`, `FileTreeWriter`, `MatplotlibAnimationWriter` and misc tomo updates / fixes by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/93

**Full Changelog**: https://github.com/CHESSComputing/ChessAnalysisPipeline/compare/v0.0.12...v0.0.13

What's Changed
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/78
* style: Updated or added (missing) docstrings by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/79
* test: add missing input yaml for tomo example by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/80
* fix: fixed x,y,z order bugs in CHAP/tomo/processor.py by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/82
* Edd fall2023 by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/83
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/84
* fix: fixed bugs found in testing tomo test cases by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/85
* Updated EDD items from the issues list by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/86
* fix: fixed inputdir implementation for common.models.map.SpecConfig by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/87
* feat: added redchi and success to EDD nexus fit output results by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/88


**Full Changelog**: https://github.com/CHESSComputing/ChessAnalysisPipeline/compare/v0.0.11...v0.0.12

What's Changed
* fix: remove 'v' from the version attribute for galaxy tools' chap req… by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/62
* build: restrict pydantic version to < 2.0 by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/64
* feat: move run options from CLI to config file by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/65
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/66
* refactor: cleanup tomo and scanparser to use smb_pars and columns by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/67
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/70
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/72
* fix: don't append data with write in MultiplePipelineItem.execute by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/73
* add: Added FileTreeWriter class and implemented it for tomo sim by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/74
* style: added units to tomo Nexus outputs by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/75
* Edd fall2023 by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/76


**Full Changelog**: https://github.com/CHESSComputing/ChessAnalysisPipeline/compare/v0.0.10...v0.0.11

What's Changed
* add: new Writer and galaxy tool for Chapbook demo by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/60


**Full Changelog**: https://github.com/CHESSComputing/ChessAnalysisPipeline/compare/v0.0.9...v0.0.10

New release must be created in order for galaxy tools to pick up the additional Writer.

What's Changed
* style: Added/updated docstrings for tomo by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/47
* fix: Fixed the Galaxy tools to work with CHAP v0.0.8 by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/48
* doc: fix bugs in documentation source. by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/50
* Add support for UserProcessor (part of CHAPaaS) by vkuznet in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/51
* add: tomo_reduce.xml: added manual option to enter detector info by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/52
* bump: update saxswaxs reduce galaxy tool by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/53
* CI/CD chores by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/54
* add RawDetectorDataMapProcessor by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/55
* refactor: add a PipelineItem.get_config method by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/56
* Dev rolf by rolfverberg in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/57
* refactor: move CHAP.common.utils to CHAP.utils by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/58
* 31 cicd for galaxy tools by keara-soloway in https://github.com/CHESSComputing/ChessAnalysisPipeline/pull/59


**Full Changelog**: https://github.com/CHESSComputing/ChessAnalysisPipeline/compare/v0.0.8...v0.0.9