Clophfit

Fix

- **ci**: Use token to upload to TestPyPI
- The spectra glob emcee progress to False

Docs

- Correct tutorials using pymc with cov_matrix
- Fix prenspire tutorial
- Fix prtecan tutorial
- Fix LMfit tutorial
- Fix LMfit tutorial

Build

- update ruff requirement from <=0.3.6 to <=0.3.7 (544)
- update commitizen requirement from <=3.21.3 to <=3.22.0 (543)
- update ruff requirement from <=0.3.5 to <=0.3.6 (542)
- update pandas requirement from <=2.2.1 to <=2.2.2 (541)
- update sphinx-autodoc-typehints requirement from <=2.0.0 to <=2.0.1 (540)
- **docs**: Update to the official upload-artifact action
- **style**: Fix few ruff linting errors
- Drop python 3.9; add 3.12
- update scipy requirement from <=1.12.0 to <=1.13.0
- update arviz requirement from <=0.17.1 to <=0.18.0 (537)
- update lmfit requirement from <=1.2.2 to <=1.3.0 (536)
- update matplotlib requirement from <=3.8.3 to <=3.8.4 (535)
- bump codecov/codecov-action from 4.1.1 to 4.2.0 (534)
- update ruff requirement from <=0.3.4 to <=0.3.5 (532)
- update commitizen requirement from <=3.20.0 to <=3.21.3 (530)
- bump actions/configure-pages from 4 to 5 (529)

Refactor

- **build**: Adopt pydoclint and drop darglint
- **build**: From black to ruff format; tutorials

chore

- update pre-commit hooks (545)
- update pre-commit hooks (538)
- update pre-commit hooks (531)

Fix

- **ci**: Add codecov token
- commitizen version v3.13.0 from 3.12.0
- avoid warnings from some pytest

Docs

- Adopt github-pages-deploy-action

Build

- bump codecov/codecov-action from 4.1.0 to 4.1.1 (528)
- update pre-commit requirement from <=3.6.2 to <=3.7.0 (526)
- update ruff requirement from <=0.3.3 to <=0.3.4 (525)
- update commitizen requirement from <=3.18.4 to <=3.20.0 (524)
- update ruff requirement from <=0.3.2 to <=0.3.3 (522)
- update pandas-stubs requirement (521)
- update coverage[toml] requirement from <=7.4.3 to <=7.4.4 (520)
- update commitizen requirement from <=3.18.3 to <=3.18.4 (519)
- update arviz requirement from <=0.17.0 to <=0.17.1 (518)
- bump hatch from 1.9.3 to 1.9.4 in /.github/workflows (516)
- update commitizen requirement from <=3.18.0 to <=3.18.3 (515)
- update mypy requirement from <=1.8.0 to <=1.9.0 (514)
- update pytest requirement from <=8.1.0 to <=8.1.1 (513)
- update ruff requirement from <=0.3.1 to <=0.3.2 (512)
- update sphinxcontrib-plantuml requirement from <=0.28 to <=0.29 (511)
- update commitizen requirement from <=3.17.0 to <=3.18.0 (510)
- update ruff requirement from <=0.3.0 to <=0.3.1 (509)
- update commitizen requirement from <=3.16.0 to <=3.17.0 (508)
- update pytest requirement from <=8.0.2 to <=8.1.0 (507)
- update ruff requirement from <=0.2.2 to <=0.3.0 (506)
- bump codecov/codecov-action from 4.0.2 to 4.1.0 (505)
- update commitizen requirement from <=3.15.0 to <=3.16.0 (504)
- bump codecov/codecov-action from 4.0.1 to 4.0.2 (503)
- update pytest requirement from <=8.0.1 to <=8.0.2 (502)
- update pandas requirement from <=2.2.0 to <=2.2.1 (501)
- update coverage[toml] requirement from <=7.4.2 to <=7.4.3 (500)
- update sphinxcontrib-plantuml requirement from <=0.27 to <=0.28 (499)
- update coverage[toml] requirement from <=7.4.1 to <=7.4.2 (498)
- update ruff requirement from <=0.2.1 to <=0.2.2 (496)
- update pytest requirement from <=8.0.0 to <=8.0.1 (495)
- update pre-commit requirement from <=3.6.1 to <=3.6.2 (494)
- update commitizen requirement from <=3.14.1 to <=3.15.0 (493)
- update pandas-stubs requirement (492)
- update matplotlib requirement from <=3.8.2 to <=3.8.3 (491)
- update tqdm requirement from <=4.66.1 to <=4.66.2 (489)
- update pre-commit requirement from <=3.6.0 to <=3.6.1 (488)
- update sphinx-autodoc-typehints requirement (487)
- update ruff requirement from <=0.2.0 to <=0.2.1 (486)
- update numpy requirement from <=1.26.3 to <=1.26.4 (485)
- bump pip from 23.3.2 to 24.0 in /.github/workflows (484)
- update commitizen requirement from <=3.14.0 to <=3.14.1 (483)
- bump codecov/codecov-action from 3.1.6 to 4.0.1 (482)
- update commitizen requirement from <=3.13.0 to <=3.14.0 (480)
- update ruff requirement from <=0.1.15 to <=0.2.0 (481)
- bump codecov/codecov-action from 3.1.5 to 3.1.6 (478)
- update xdoctest requirement from <=1.1.2 to <=1.1.3 (477)
- update ruff requirement from <=0.1.14 to <=0.1.15 (476)
- update pytest requirement from <=7.4.4 to <=8.0.0 (475)
- update coverage[toml] requirement from <=7.4.0 to <=7.4.1 (474)
- update sphinx-autodoc-typehints requirement (473)
- bump codecov/codecov-action from 3.1.4 to 3.1.5 (472)
- update seaborn requirement from <=0.13.1 to <=0.13.2 (471)
- bump hatch from 1.9.2 to 1.9.3 in /.github/workflows (470)
- bump hatch from 1.9.1 to 1.9.2 in /.github/workflows (469)
- update pandas requirement from <=2.1.4 to <=2.2.0 (467)
- update ruff requirement from <=0.1.13 to <=0.1.14 (468)
- update scipy requirement from <=1.11.4 to <=1.12.0 (466)
- update pydata-sphinx-theme requirement from <=0.15.1 to <=0.15.2 (465)
- update ruff requirement from <=0.1.12 to <=0.1.13 (464)
- update ruff requirement from <=0.1.11 to <=0.1.12 (463)
- update autodocsumm requirement from <=0.2.11 to <=0.2.12 (462)
- update pydata-sphinx-theme requirement from <=0.14.4 to <=0.15.1 (461)
- update numpy requirement from <=1.26.2 to <=1.26.3 (460)
- update ruff requirement from <=0.1.9 to <=0.1.11 (459)
- update seaborn requirement from <=0.13.0 to <=0.13.1 (458)
- update pytest requirement from <=7.4.3 to <=7.4.4 (457)
- update arviz requirement from <=0.16.1 to <=0.17.0 (456)
- update coverage[toml] requirement from <=7.3.4 to <=7.4.0 (455)
- update pandas-stubs requirement (454)
- bump hatch from 1.9.0 to 1.9.1 in /.github/workflows (453)
- update ruff requirement from <=0.1.8 to <=0.1.9 (452)
- update mypy requirement from <=1.7.1 to <=1.8.0 (451)
- update coverage[toml] requirement from <=7.3.3 to <=7.3.4 (450)
- bump hatch from 1.8.1 to 1.9.0 in /.github/workflows (446)
- update pandas-stubs requirement (445)
- bump pip from 23.3.1 to 23.3.2 in /.github/workflows (444)
- bump actions/download-artifact from 3 to 4 (443)
- update coverage[toml] requirement from <=7.3.2 to <=7.3.3 (442)
- bump hatch from 1.8.0 to 1.8.1 in /.github/workflows (441)
- update ruff requirement from <=0.1.7 to <=0.1.8 (440)
- bump hatch from 1.7.0 to 1.8.0 in /.github/workflows (439)
- update pandas requirement from <=2.1.3 to <=2.1.4 (438)
- update pre-commit requirement from <=3.5.0 to <=3.6.0 (437)
- bump actions/setup-python from 4 to 5 (436)
- bump actions/deploy-pages from 2 to 3 (435)
- bump actions/configure-pages from 2 to 4 (434)
- update ruff requirement from <=0.1.6 to <=0.1.7 (433)
- update mypy requirement from <=1.7 to <=1.7.1 (432)
- update commitizen requirement from <3.12.1 to <3.13.1
- bump pydata-sphinx-theme from 0.14.3 to 0.14.4 (429)
- update pygments requirement from <2.17.2 to <2.17.3 (428)
- bump sphinx-click from 5.0.1 to 5.1.0 (427)
- update pygments requirement from <2.16.2 to <2.17.2 (425)
- bump ruff from 0.1.5 to 0.1.6 (424)
- update matplotlib requirement from <3.8.2 to <3.8.3 (423)
- update scipy requirement from <1.11.4 to <1.11.5 (422)
- update numpy requirement from <1.26.2 to <1.26.3 (420)
- bump sphinx-autodoc-typehints from 1.25.0 to 1.25.2 (419)
- update mypy requirement from <1.7 to <1.8 (418)
- update pandas requirement from <2.1.3 to <2.1.4 (417)
- bump sphinx-autodoc-typehints from 1.24.1 to 1.25.0 (416)
- bump ruff from 0.1.4 to 0.1.5 (415)
- bump ruff from 0.1.3 to 0.1.4 (413)
- bump sphinx-autodoc-typehints from 1.24.0 to 1.24.1 (412)
- update matplotlib requirement from <3.8.1 to <3.8.2 (411)
- bump sphinxcontrib-plantuml from 0.26 to 0.27 (410)
- bump pydata-sphinx-theme from 0.14.2 to 0.14.3 (409)
- update pandas requirement from <2.1.2 to <2.1.3 (407)
- bump ruff from 0.1.2 to 0.1.3 (406)
- update xdoctest requirement from <1.1.2 to <1.1.3 (405)
- bump pydata-sphinx-theme from 0.14.1 to 0.14.2 (404)
- bump ruff from 0.1.1 to 0.1.2 (403)
- update pytest requirement from <7.4.3 to <7.4.4 (402)
- bump pip from 23.3 to 23.3.1 in /.github/workflows (400)
- update commitizen requirement from <3.10.2 to <3.12.1 (398)
- bump ruff from 0.1.0 to 0.1.1 (399)
- bump ruff from 0.0.292 to 0.1.0 (397)
- bump pip from 23.2.1 to 23.3 in /.github/workflows (395)
- bump pre-commit from 3.4.0 to 3.5.0 (394)
- update numpy requirement from <1.26.1 to <1.26.2 (393)
- update commitizen requirement from <3.10.1 to <3.10.2 (392)
- update mypy requirement from <1.6 to <1.7 (391)
- update coverage[toml] requirement from <7.3.2 to <7.3.3 (388)
- bump ruff from 0.0.291 to 0.0.292 (387)
- update seaborn requirement from <0.12.3 to <0.13.1 (386)
- bump pandas-stubs from 2.0.3.230814 to 2.1.1.230928 (385)
- update scipy requirement from <1.11.3 to <1.11.4 (384)
- bump ruff from 0.0.290 to 0.0.291 (382)
- update commitizen requirement from <3.9.1 to <3.10.1 (381)
- update pandas requirement from <2.1.1 to <2.1.2 (380)
- bump pydata-sphinx-theme from 0.14.0 to 0.14.1 (379)

CI/CD

- Sync dependabot update time
- Docs from gh actions

Refactor

- **build**: Run pre-commit autoupdate

chore

- update pre-commit hooks (527)
- update pre-commit hooks (523)
- update pre-commit hooks (517)
- update pre-commit hooks (497)
- update pre-commit hooks (490)
- update pre-commit hooks (426)
- update pre-commit hooks (421)
- update pre-commit hooks (414)
- update pre-commit hooks (408)
- update pre-commit hooks (401)
- update pre-commit hooks (396)
- update pre-commit hooks (390)
- update pre-commit hooks (389)
- update pre-commit hooks (383)
- update pre-commit hooks (378)

Docs

- Improve README.md

Build

- update matplotlib requirement from <3.7.4 to <3.8.1
- update numpy requirement from <1.25.3 to <1.26.1 (377)
- bump pydata-sphinx-theme from 0.13.3 to 0.14.0 (376)
- update commitizen requirement from <3.8.3 to <3.9.1 (374)
- bump ruff from 0.0.289 to 0.0.290 (373)
- bump sphinx from 7.2.5 to 7.2.6 (372)
- bump ruff from 0.0.288 to 0.0.289 (371)
- bump ruff from 0.0.287 to 0.0.288 (369)
- update matplotlib requirement from <3.7.3 to <3.7.4 (368)
- update commitizen requirement from <3.8.1 to <3.8.3 (367)

Refactor

- Fix type annotations of matplotlib-3.8.1

chore

- update pre-commit hooks (370)

Fix

- Remove insane `min=0` for S0

Docs

- Fix readme usage instruction

Test

- Fix test_fit_titration_glob missing a parametrized condition test

Build

- update pytest requirement from <7.4.2 to <7.4.3 (366)

Fix

- **note_to_csv**: Ensure unix EOL

Docs

- Add usage instruction for `ppr enspire` and `note_to_csv`

Test

- For note_to_csv

Build

- update coverage[toml] requirement from <7.3.1 to <7.3.2 (365)
- update commitizen requirement from <3.7.2 to <3.8.1 (364)

Fix

- **docs**: click cli

Build

- bump actions/checkout from 3 to 4 (363)
- update commitizen requirement from <3.7.1 to <3.7.2 (361)
- bump pre-commit from 3.3.3 to 3.4.0 (360)
- bump ruff from 0.0.286 to 0.0.287 (359)
- update pytest requirement from <7.4.1 to <7.4.2 (358)
- update pandas requirement from <2.0.4 to <2.1.1 (357)
- bump sphinx from 7.2.4 to 7.2.5 (356)
- bump sphinx from 7.2.3 to 7.2.4 (354)
- update commitizen requirement from <3.6.1 to <3.7.1 (353)
- bump sphinxcontrib-plantuml from 0.25 to 0.26 (352)
- bump nbsphinx from 0.9.2 to 0.9.3 (351)
- bump ruff from 0.0.285 to 0.0.286 (350)
- bump sphinx from 7.2.2 to 7.2.3 (349)
- bump sphinx-click from 4.4.0 to 5.0.1 (346)
- update click requirement from <8.1.7 to <8.1.8 (347)
- bump ruff from 0.0.284 to 0.0.285 (345)
- update scipy requirement from <1.11.2 to <1.11.3 (344)
- bump sphinx from 7.1.2 to 7.2.2 (343)

chore

- update pre-commit hooks (362)
- update pre-commit hooks (355)
- update pre-commit hooks (348)