Codon-bias

Latest version: v0.3.5

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0.3.5

- improved: input type validation

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/v0.3.4...v0.3.5

0.3.4

- added: FrequencyOfOptimalCodons: weights arg (closes 5)
- fixed: pandas v2 compatibility (closes 5)
- improved: FrequencyOfOptimalCodons: default thresh 0.95 -> 0.8

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/v0.3.3...v0.3.4

0.3.3

What's Changed
* Use `np.prod` instead of `np.product` by l-benedetti-insta in https://github.com/alondmnt/codon-bias/pull/4

New Contributors
* l-benedetti-insta made their first contribution in https://github.com/alondmnt/codon-bias/pull/4

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/v0.3.2...v0.3.3

0.3.2

What's Changed
* tAI fixes/improvements by moritzburghardt in https://github.com/alondmnt/codon-bias/pull/3
- new: optimize_s_values method
- new: allow custom s_values
- fixed: handle invalid literal for int in gtrnadb table
- fixed: CERTIFICATE_VERIFY_FAILED error on GtRNAdb

New Contributors
* moritzburghardt made their first contribution in https://github.com/alondmnt/codon-bias/pull/3

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/v0.3.1...v0.3.2

0.3.1

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/0.3.0...v0.3.1

0.3.0

- new:
- new module: `optimizers` with the classes MaxWeight, MinWeight, and BalancedWeight
- new module: `random` with the classes Permuter, IntraSeqPermuter and IntraPosPermuter
- added utils.ReferenceSelector
- changed:
- utils.translate returns a dataframe by default
- fixed:
- avoid numpy deprecation warning in VectorScore's get_vector function

**Full Changelog**: https://github.com/alondmnt/codon-bias/compare/0.2.0...0.3.0

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