Connectomemapper

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* ENH: Refactored code (diffusion pipeline) to support current Nipype release
* ENH: Adoption of Brain Imaging Data Structure (BIDS) for input and derivatives data
* ENH: Added Mrtrix3 preprocessing (dwidenoise, dwibiascorrec), reconstruction (dwi2response, tensor2metrics, dwi2fod), tracking (tckgen)
* ENH: Added option '-fsl_grad' to Mrtrix mrconvert interface

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* Initial beta release of the new Connectome Mapper

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* ENH: Added preprocessing options (eddy current and motion correction)
* ENH: Added custom segmentation and atlas options
* ENH: Added Mrtrix reconstruction (CSD and tensor) and tractography (deterministic and probabilistic)
* ENH: Added Camino reconstruction (single tensor, multi-tensor, ballstick, ADC and restore) and tractography (deterministic and probabilistic)
* ENH: Added FSL probabilistic tractography (ProbTrackX)
* ENH: Added Gibbs diffusion processing (global tractography)
* ENH: Added source files for sphinx documentation
* FIX: Fixed output inspection bugs

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* ENH: Implemented Non-linear registration option in registration stage
* ENH: Implemented the Configuration menu action (save/load config file)
* ENH: Added matrice inspection of Connectome Stage
* ENH: Added custom gradient table option for Diffusion
* FIX: Fixed Cff conversion bug
* FIX: Fixed processing status bugs

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* ENH: Added outputs inspectors
* ENH: Removed CMP folder of RESULTS to avoid file duplication
* ENH: Merged streamlining and filtering to reduce temp files
* ENH: Removed unnecessary final_scale*.trks (only one needed)
* ENH: Added multicore setting
* ENH: Added processing status window and thread
* ENH: New output options: graphml and cff
* FIX: Reformat of the class names
* FIX: Removed dependence testing to enthoughts.traits (not working)

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* Initial release of the new Connectome Mapper