Cosmosid-cli

Fixed

1. Minor: progress indicator update to 100% on task exit.

* Added `mkdir` command [Make Directory](README.mdmake-directory)

Changed

* Added `--timeout` configuration to [Reports](README.mdgenerate-analysis-report-archive) command.
* Added support for running `champ_core:1.0.0` workflow.
* Added support for downloading `champ-supplementary` artifact.
* Added to command [Runs](README.mdretrieve-sample-runs) results table `created, workflow_name, workflow_version, artifact_types`

Changed

* The command [workflows](README.mdworkflows) shows enabled workflows
* The workflow parameter allows version specification: ex. `taxa:1.1.0`

Changed

* Add the ability to download 16s (ampliseq) summary comparative results.
* Added support for running Ampliseq 16s batch workflow. The command [Upload](README.mdupload-files) got mandatory Ampliseq Batch parameters: `--amplicon-preset` or `--forward-primer` with `--reverse-primer.`
* Added support for the Host Removal step for WGS samples on file upload. The command [Upload](README.mdupload-files) has the optional parameter `--host-name.`
* The command [Upload](README.mdupload-files) uses Batch Import Workflow.
* Added the possibility to download original files by file with the list of samples' IDs in command. The command [Download](README.mddownload-original-samples) has parameter `--input-file`.

Fixed

* Non-zero exit code on failures

Fixed

* Fixed argument `--dir` for the command `upload`