Cryoet-data-portal

What's Changed

* fix: update client tomogram documentation by manasaV3 in https://github.com/chanzuckerberg/cryoet-data-portal/pull/560
* chore: Updates to find method docs. by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/615
* chore: docs formatting fixes by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/616
* fix: Don't dowload too many annotation metadata files by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/639
* chore: Updating client for new db fields by manasaV3 in https://github.com/chanzuckerberg/cryoet-data-portal/pull/634
* fix: Raise exception when attempting to filter on related objects. by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/642

**Full Changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v3.0.1...v3.0.2

What's Changed
* Improve type hints for the client by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/427
* Add missing documentation for TiltSeries fields. by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/452

**Full Changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v3.0.0...v3.0.1

What's Changed
* Set up a full local test infrastructure for testing the CLI by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/410
* [breaking] Updates the client to return lists instead of generators for all find() and n:many relationships by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/412

New Contributors
* aganders3 made their first contribution in https://github.com/chanzuckerberg/cryoet-data-portal/pull/294

**Full Changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v2.0.0...v3.0.0

This version of the Python API represents a breaking change from v1, which was mostly needed to accommodate handling multiple annotation types and formats. See more details below.

What's New
* Added `AnnotationFile` to allow multiple annotation files in `Annotation.files`.
* Added `TomogramAuthor` to describe multiple authors in `Tomogram.authors`.
* `Dataset`
* Added `cell_component_name` and `cell_component_id`.
* Added `key_photo_url` and `key_photo_thumbnail_url`.
* `DatasetAuthor`
* Added `author_list_order`.
* `Tomogram`
* Added `key_photo_url` and `key_photo_thumbnail_url`.
* Added `offset_x`, `offset_y`, and `offset_z`.
* Added `affine_transformation_matrix`.
* Added `type`.
* Added `neuroglancer_config`.
* `Annotation`
* Added `shape` and `format` arguments to `Annotation.download`.

Breaking Changes
* Tomogram
* Removed downsampled MRC volume URLs: `https_mrc_scale1`, `https_mrc_scale2`, `s3_mrc_scale1`, `s3_mrc_scale2`.
* Removed `binning` keyword argument from `Tomogram.download_mrcfile`.
* Annotation
* Removed annotation path URLs:`https_annotations_path`, `s3_annotations_path` and moved to `AnnotationFile.https_path` and `AnnotationFile.s3_path`.
* Removed `shape_type` and moved to `AnnotationFile`.
* Removed `object_width`, `object_weight`, and `object_diameter`.

**Full changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v1.0.1...v2.0.0

*fix:* Fix model `get_by_id`

**Full Changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v1.0.0...v1.0.1

What's Changed
* BREAKING CHANGE: adjust the data model to support tomograms of multiple sizes by jgadling in https://github.com/chanzuckerberg/cryoet-data-portal/pull/4


**Full Changelog**: https://github.com/chanzuckerberg/cryoet-data-portal/compare/v0.0.2...v1.0.0