Cytofdr

This is a minor maintenance update of v0.3.x with updated references and documentation.

Changes and New Features

- Updated referneces and citation information in all relavent documentaion pages
- Removed a warning on SAUCIE's installation documentation

Improvements

- Update-to-date documentation and references

Deprecations

- (Since v0.2.0) The `comparison_classes` parameter of the `EvaluationMetrics.embedding_concordance` method will no longer accept `str` input.

This releases adds some new features along with some minor improvements and fixes.

Changes and New Features

- Add `minmax` normalization option for the `evaluation.EvaluationMetric.EMD` method
- Add alternative implementation of `evaluation.EvaluationMetric.NPE` with total variation distance (TVD)
- Allow both min-max EMD and and TVD NPE for automatic evaluation of DR methods

Improvements

- Docstrings and documentations reformatted for clarity

Deprecations

- (Since v0.2.0) The `comparison_classes` parameter of the `EvaluationMetrics.embedding_concordance` method will no longer accept `str` input.

This is a minor maintenance update of v0.2.x with updated references and documentation.

Changes and New Features
- Updated referneces and citation information in all relavent documentaion pages
- Removed a warning on SAUCIE's installation documentation

Improvements
- Update-to-date documentation and references

Deprecations
- (Since v0.2.0) The `comparison_classes` parameter of the `EvaluationMetrics.embedding_concordance` method will no longer accept `str` input.

This is a minor maintenance update of v0.2.x with a few improvements on documentation and docstrings.

Changes and New Features

- Update licensing information

Improvements

- Improve documentation and docstrings

Deprecations

- (Since v0.2.0) The `comparison_classes` parameter of the `EvaluationMetrics.embedding_concordance` method will no longer accept `str` input.

This releases adds some new features along with some minor improvements and fixes.

Changes and New Features

- Add `pairwise_downsample` option for pairwise distance optimization in `Reductions.evaluate` method.
- Add example datasets for the GitHub repo.
- Improve docstrings for documentations.
- Improve unit tests for coverage.

Deprecations

- The `comparison_classes` parameter of the `EvaluationMetrics.embedding_concordance` method will no longer accept `str` input.

This is a minor update of v0.1.x with a few improvements on documentation and docstrings. Given the
release of v0.3.0, this version is the End-of-Life (EOL) release for v0.1.x. This version will no
longer be maintained going forward. For new features and future fixes, migrate to v0.2.0 or higher,
which is compatible with v0.1.x.

Changes and New Features

- Update licensing information

Improvements

- Improve documentation and docstrings