Dcd-mapping

What's Changed
* fix: Update alignment and annotation functionality by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/79
* feat: Add new statistics tables and figures to analysis notebooks by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/81
* feat!: Add updates from score set rerun by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/82


**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/compare/0.2.0...0.3.0

What's Changed
* test: fix fixture construction by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/58
* fix: perform appropriate cleanup after seqrepo check by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/59
* cicd: update github actions versions by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/62
* style: update ruff by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/61
* cicd: update precommit and add new hooks by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/60
* fix: ensure proper ref seq by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/63
* feat!: Use VRS 2.0 models as primary output by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/57
* Update notebooks, alignment, and mapping code by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/64
* Add check in transcript selection to determine if start and end coordinates fully bound an exon by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/66
* Fix typo for experiment set 97 by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/67
* Update alignment code for other/noncoding score sets by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/68
* chore: add schema refresher by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/71
* Correct alignment logic, ensure proper variant selection for post-mapped genomic variants by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/70
* Update mappings link in README by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/72
* chore: remove notebook checkpoint by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/74
* Update README to indicate 0.1.3 dcd-mapping release by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/75
* docs: add citation to readme by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/77
* feat!: Modify annotations and schemas by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/76


**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/compare/0.1.3...0.2.0

What's Changed
* docs: add zenodo badge by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/50
* feat: add data prereq checks to CLI by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/54
* build: pin dependencies by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/56


**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/compare/0.1.2...0.1.3

What's Changed
* chore: update author list by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/49


**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/compare/0.1.1...0.1.2

What's Changed
* build: add license metadata by jsstevenson in https://github.com/ave-dcd/dcd_mapping/commit/3245bcba114576c06f9c620fba54057d3d12fb0b
* nb: update reqs.txt by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/48


**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/compare/0.1.0...0.1.1

What's Changed
* Add initial notebook by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/2
* Add RefSeq url scraping by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/4
* display output in notebook by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/6
* Add MaveDB Analysis Notebook by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/8
* Issue 9 by jarbesfeld in https://github.com/ave-dcd/dcd_mapping/pull/11
* package development/refactor work by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/27
* feat: enable configuration of BLAT binary path by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/28
* fix: handle latest mavedb API updates by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/29
* style: update ruff by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/30
* Analysis refactor changes by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/31
* build: require >=3.10 by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/32
* test: reorganize + remove VRS tests from CI by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/34
* feat!: rename VRS 1.3 class by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/33
* docs: update READMEs by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/35
* feat: support ?/Xaa variants by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/39
* refactor annotate and VRS_map modules by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/41
* feat: additional analysis refactoring by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/47
* April/May analysis refactor by jsstevenson in https://github.com/ave-dcd/dcd_mapping/pull/46

New Contributors
* jarbesfeld made their first contribution in https://github.com/ave-dcd/dcd_mapping/pull/2
* jsstevenson made their first contribution in https://github.com/ave-dcd/dcd_mapping/pull/27

**Full Changelog**: https://github.com/ave-dcd/dcd_mapping/commits/0.1.0