Derip2

- Add methods to filter records on CRI or GC thresholds
- Filter to n best records on CRI or GC
- Add coverage tracking with codecov
- Fix README image links
- Add tutorial notebook with real data demo
- DeRIP2 can now take alignment fasta file OR Bio.Align.MultipleSeqAlignment object


**Full Changelog**: https://github.com/Adamtaranto/deRIP2/compare/v0.2.0...v0.3.0

This release overhauls the main app and is not backwards compatible.

- Introduced new cmd line options
- All outputs have standard names with a user specified prefix
- Main app now uses the DeRIP Class
- Fixed plotting issues for large alignments
- Use Click for arg handling
- Add PyOpenSci reqs (CoC, Citation file, Contributing guide)

What's Changed

Added DeRIP Class for compatibility with TEtrimmer.
Use pre-commit-hooks to enforce formatting
Removed Gitpod links and configs
Improve logging
Add TUI option
Add pytests

**Full Changelog**: https://github.com/Adamtaranto/deRIP2/compare/0.0.3...v0.1.0