Changes
* added vq_vae_accelerate notebook and trained vq_vae model model4cells (101) ttunja
* adding the kmer metrics (100) hssn-20
* Adding notebook for filtering master_dataset (76) ssenan
* adding the time warping functionality (63) noahweber1
* Update README.md (73) Ryams
* DDIM Sampling implemented (65) mihirneal
* Resolve contributor list in an independant file (25) IhabBendidi
* Fixes formatting in the 'Tasks and Potential Roadmap' section (1) jxilt
:rocket: Features
* pytorch-lightning/hydra-zen integration (105) ssenan
* merge codebase changes on main into default (92) cameronraysmith
* Fixed script pathing, now works as intended on cluster (87) ssenan
* Adding subscripts created from original single script (84) ssenan
* refactor: (minor) vq-vae (61) SauravMaheshkar
* Adding the modified NB (60) noahweber1
:beetle: Fixes
* Changes all import lightning to import pytorch_lightning (127) ssenan
* Comment out config.py to resolve pre-commit parsing error (99) ssenan
:rotating_light: Testing
* Update the unit tests (71) jamesthesnake
:construction_worker: Continuous Integration
* make release depend on build and docker (129) cameronraysmith
* add release workflows (125) cameronraysmith
* Comment out config.py to resolve pre-commit parsing error (99) ssenan
* add actions/stale for issues and prs (82) cameronraysmith
* add pre-commit configuration (80) cameronraysmith
:books: Documentation
* use smaller README image (131) cameronraysmith
* add documentation (119) cameronraysmith
* update metadata (112) cameronraysmith
* add actions/stale for issues and prs (82) cameronraysmith
* add contributor covenant code of conduct (78) cameronraysmith
:hammer: Refactoring
* Removed validation metrics from sampling metrics (108) ssenan
* merge codebase changes on main into default (92) cameronraysmith
* Fixed script pathing, now works as intended on cluster (87) ssenan
* Adding subscripts created from original single script (84) ssenan
* refactor: (minor) vq-vae (61) SauravMaheshkar
* Adding the modified NB (60) noahweber1
:package: Dependencies
* add docker container (121) cameronraysmith
* add build system (117) cameronraysmith