Dosdp

Bugfix release for `dosdp-tools query` performance.

What's Changed
* Fix problematic SPARQL query ordering. by balhoff in https://github.com/INCATools/dosdp-tools/pull/403


**Full Changelog**: https://github.com/INCATools/dosdp-tools/compare/v0.19...v0.19.1

What's Changed
* Output version and git hash for --version. by balhoff in https://github.com/INCATools/dosdp-tools/pull/392
* Propagate logging context. by balhoff in https://github.com/INCATools/dosdp-tools/pull/400

Dependency updates
* Update apache-jena-libs to 4.4.0 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/391
* Update scribe-slf4j to 3.6.10 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/390
* Update scala-library to 2.13.8 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/385
* Update sbt to 1.5.8 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/381
* Update robot-core to 1.8.3 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/378
* Update zio, zio-streams, zio-test, ... to 1.0.13 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/375
* Update scala-csv to 1.3.10 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/377
* Update circe-yaml to 0.14.1 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/345
* Update sbt-buildinfo to 0.11.0 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/397
* Update scribe-slf4j to 3.7.1 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/395
* Update sbt to 1.6.2 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/394
* Update sbt-native-packager to 1.9.8 by scala-steward in https://github.com/INCATools/dosdp-tools/pull/396

**Full Changelog**: https://github.com/INCATools/dosdp-tools/compare/v0.18...v0.19

**Important:** Beginning with this release, `dosdp-tools` requires Java 11 or higher.

What's Changed
* Multi clause printf by hkir-dev in https://github.com/INCATools/dosdp-tools/pull/336
* MultiClause zero2many support by hkir-dev in https://github.com/INCATools/dosdp-tools/pull/349
* Output a pattern conformance report as RDF for a batch query run. by balhoff in https://github.com/INCATools/dosdp-tools/pull/365
* hiding stacktrace for DOSDPError instances by jdr0887 in https://github.com/INCATools/dosdp-tools/pull/300
* Change print-query behavior to print to the console, and also run match. by balhoff in https://github.com/INCATools/dosdp-tools/pull/367
* Alphabetize docs index. by balhoff in https://github.com/INCATools/dosdp-tools/pull/368

**Full Changelog**: https://github.com/INCATools/dosdp-tools/compare/v0.17...v0.18

New command, `docs`: output a Markdown file for each pattern.

Example command line:


dosdp-tools docs --obo-prefixes=true --batch-patterns="activator_activity anchored_membrane_component bounding_membrane_of_organelle cc_assembly cc_disassembly" --template=../go-ontology/src/design_patterns --outfile=docs --infile=../go-ontology/src/design_patterns --data-location-prefix='https://github.com/geneontology/go-ontology/tree/master/src/design_patterns/' --ontology=go-plus.owl

Includes bug fixes as well as new feature for dosdp-tools query on annotation values.

v0.16-SNAPSHOT
Release for testing dosdp-tools query on annotation values. Example:

Command:

`dosdp-tools query --obo-prefixes=true --template=cc_transport_from_to.yaml --restrict-axioms-to=annotation --ontology=go-base.owl`

Ontology: http://purl.obolibrary.org/obo/go/go-base.owl

Pattern `cc_transport_from_to.yaml `:

yaml
pattern_name: 'cc_transport_from_to'

classes:
transport: 'GO:0006810'
cellular component: 'GO:0005575'

relations:
has_target_start_location: 'RO:0002338'
has_target_end_location: 'RO:0002339'

vars:
target_start: "'cellular component'"
target_end: "'cellular component'"

readable_identifiers:
- rdfs:label
- oboInOwl:hasExactSynonym

name:
text: "%s to %s transport"
vars:
- target_start
- target_end

equivalentTo:
text: " 'transport' and ('has_target_start_location' some %s) and ('has_target_end_location' some %s)"
vars:
- target_start
- target_end


v0.15.1-SNAPSHOT
Snapshot for testing.

Bugfix to file suffixes in batch mode. Dependency updates.