Fastoma

What's Changed
* Improved pipeline
* Added automatically generated report based on jupyter notebook
* Bump actions/setup-python from 4 to 5 by dependabot in https://github.com/DessimozLab/FastOMA/pull/10
* Bump docker/metadata-action from 4 to 5 by dependabot in https://github.com/DessimozLab/FastOMA/pull/11
* Bump actions/checkout from 3 to 4 by dependabot in https://github.com/DessimozLab/FastOMA/pull/17
* Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.8.11 by dependabot in https://github.com/DessimozLab/FastOMA/pull/16
* Bump docker/login-action from 2 to 3 by dependabot in https://github.com/DessimozLab/FastOMA/pull/15

New Contributors
* dependabot made their first contribution in https://github.com/DessimozLab/FastOMA/pull/10

**Full Changelog**: https://github.com/DessimozLab/FastOMA/compare/v0.1.6...v0.2.0

What's Changed
* update nf and roothogMering by sinamajidian in https://github.com/DessimozLab/FastOMA/pull/9


**Full Changelog**: https://github.com/DessimozLab/FastOMA/compare/v0.1.4...v0.1.6

- Find new gene families with linclust if mmseqs is installed
- use quoted protein name to handle special chars in fasta record
- check input first

Release v0.1.0: improved nextflow pipeline with OGs as outputs. 3 Sep. 2023.

FastOMA


preRelease


second
with dask

first
draft working version