Fermo-core

Fixed
- Fixed bug in SummaryWriter: a nonexisting function was referenced, leading to premature exit of module.

Fixed
- Versioning

Removed
- [Breaking change] Removed MS2Query de novo annotation after observation of process instability (unforeseen process termination by system with SIGKILL (9))

Fixed

- Added exception for fail of Sample Scores calculation in case of lack of spectral similarity networking data (e.g. no MS/MS data provided)

Fixed

- Corrected erroneous assignment of 'True' to 'module_passed' for FragmentAnnotator and NeutralLossAnnotator if no MS/MS information was provided

Changed

- Loosened typing restrictions for Feature and Sample object attributes: area and height (intensity) now accept float values.

Removed
- [Breaking change] Removed toggle 'nonbiological' from 'FragmentAnnotator' and from parameters file; 'nonbiological' fragment annotation is now performed automatically

Security

- Instead of full file paths, only filenames are now written to the 'out.fermo.session.json' file