Finaletoolkit

Latest version: v0.10.7

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1.1.0

and this project adheres to
[Semantic Versioning](https://semver.org/spec/v2.0.0.html).

0.10.7

Added
- Snakemake workflow included in FinaleToolkit documentation.

Fixed
- Issue with `filter-file` where the lack of `output_file.flush()` would
create incorrect outputs.

0.10.6

Fixed
- More descriptive error message in `multi_wps` when an invalid interval
with `start > stop` is encountered. Now the chromosome name is mentioned
to assist users.

0.10.5

Changed
- added `intersect_policy` to `filter_file`

Fixed
- blacklist functionality of `filter_file`

0.10.4

Changed
- Changed `filter-bam` function into `filter-file`; Now accepts BED and CRAM in
addition to BAM
- filter-file command can now accept a blacklist file

0.10.3

Fixed
- Update various docstrings and help statements to no longer mention SAM
files as an accepted format

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