Fl4health

What's Changed
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/267
* Modify LR Scheduler + Test by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/268
* try except block for dataset.json in case nnunet_raw is unavailable by scarere in https://github.com/VectorInstitute/FL4Health/pull/266
* Bump waitress from 3.0.0 to 3.0.1 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/269
* Address Shawns CR on previous PR by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/270
* Elapsed time was backwards by scarere in https://github.com/VectorInstitute/FL4Health/pull/271
* modified progress bar formatting to inherit from flwr formatting by scarere in https://github.com/VectorInstitute/FL4Health/pull/273
* Modify curr step of LR Scheduler to start at 0 instead of 1 by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/274
* Fix typing on assertion for ReportsManager by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/276
* Changes to Support Expanded Experimentation with FedDG-GA by emersodb in https://github.com/VectorInstitute/FL4Health/pull/252
* Bump pypa/gh-action-pypi-publish from 1.10.3 to 1.11.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/277
* Adaptive and Fed DG-GA PFL Experimentation by emersodb in https://github.com/VectorInstitute/FL4Health/pull/251
* Add More Logging To FedDG-GA Strategy by emersodb in https://github.com/VectorInstitute/FL4Health/pull/272
* Updating the FLamby installation instructions to reflect some changes on their end. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/275
* Lowercasing torch device variables throughout library when not global by emersodb in https://github.com/VectorInstitute/FL4Health/pull/279
* Pinning a source of randomness in server-side aggregation. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/278
* First pass at optionally shutting down server (and remaining clients) on failures by emersodb in https://github.com/VectorInstitute/FL4Health/pull/280
* Adding a touch of logging for checkpointing errors by emersodb in https://github.com/VectorInstitute/FL4Health/pull/281
* Bump pypa/gh-action-pypi-publish from 1.11.0 to 1.12.2 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/284
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/282
* More Masked Layers for FedPM by yc7z in https://github.com/VectorInstitute/FL4Health/pull/283
* Fixing infinite base server test by emersodb in https://github.com/VectorInstitute/FL4Health/pull/289
* Moving relevant files to use the future annotations import for 'in-class' return values by emersodb in https://github.com/VectorInstitute/FL4Health/pull/286
* Modified some of the reporting keys and overhauled the wandb reporter by scarere in https://github.com/VectorInstitute/FL4Health/pull/288
* Small update to FLamby install instructions to avoid cluster failures. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/287
* Bump aiohttp from 3.10.3 to 3.10.11 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/290
* Name change for server folder to servers by emersodb in https://github.com/VectorInstitute/FL4Health/pull/292
* Add resume wandb reporter by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/293
* Update deep mmd client and loss implementation by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/285
* Custom nnunet trainer by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/296
* Bump mlflow from 2.15.1 to 2.16.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/297
* Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/302
* Converting to masked layers bug fix by yc7z in https://github.com/VectorInstitute/FL4Health/pull/303
* Server storing FL configs and Consolidating Base Server Functionality by emersodb in https://github.com/VectorInstitute/FL4Health/pull/294
* Add max_num_validation_steps member of config and client and related … by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/304
* Nnunet amp integration by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/305
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/306
* Upgrading peotry lock to include jinja update. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/308
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/310
* Consolidating model and state checkpointing on the client and server sides. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/298
* Mypy Typing Migration and Some typo fixes by emersodb in https://github.com/VectorInstitute/FL4Health/pull/299
* A few fixes to our Examples by emersodb in https://github.com/VectorInstitute/FL4Health/pull/300
* Keras vulnerability ignore until there is a fix by emersodb in https://github.com/VectorInstitute/FL4Health/pull/312
* [CI] Add github action for creating Github release by nerdai in https://github.com/VectorInstitute/FL4Health/pull/311
* Small download script changes for RxRx1 by emersodb in https://github.com/VectorInstitute/FL4Health/pull/315
* Smoke test bug fix for Andrei with the state checkpointers by emersodb in https://github.com/VectorInstitute/FL4Health/pull/316
* [CU-868byqhk5] Fix smoke tests for GPU by nerdai in https://github.com/VectorInstitute/FL4Health/pull/314
* Pin PyArrow to v^17.0 by nerdai in https://github.com/VectorInstitute/FL4Health/pull/317
* Rxrx1 research running scripts by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/309
* Move assert statements out of `run_smoke_test` and into the actual test (for graceful shutdown in case of failure) by nerdai in https://github.com/VectorInstitute/FL4Health/pull/318
* Add early stop module by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/301
* Bump pypa/gh-action-pypi-publish from 1.12.3 to 1.12.4 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/324

New Contributors
* nerdai made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/311

**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.2.2...v0.3.0

What's Changed
* Move reporting start_time in servers to before fit call by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/261
* Nnunet server patch by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/262
* Make necessary changes to model merge server and client with new repo… by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/263
* Turning follow imports on in mypy for better coverage by emersodb in https://github.com/VectorInstitute/FL4Health/pull/264


**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.2.1...v0.2.2

What's Changed
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/259
* Update dependencies by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/260
* PR4: Add deep_mmd_loss files by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/170


**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.2.0...v0.2.1

What's Changed
* Proposed changes to the mkmmd loss function by emersodb in https://github.com/VectorInstitute/FL4Health/pull/102
* Update MK-MMD Loss Suggestions and Tests by emersodb in https://github.com/VectorInstitute/FL4Health/pull/181
* CIFAR Experiments PR Suggestions by emersodb in https://github.com/VectorInstitute/FL4Health/pull/184
* Changed nnunet LR Schedule and fixed memory leak by scarere in https://github.com/VectorInstitute/FL4Health/pull/222
* Bump nltk from 3.8.1 to 3.9 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/223
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/224
* Created reset signal handler decorator by scarere in https://github.com/VectorInstitute/FL4Health/pull/225
* Adding a README to the examples folder. by emersodb in https://github.com/VectorInstitute/FL4Health/pull/226
* Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/229
* Update requirements by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/230
* Update scaffold by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/231
* Nnunet core refactor by scarere in https://github.com/VectorInstitute/FL4Health/pull/227
* Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/233
* Basic client checkpointing and LR Scheduling by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/234
* Add updates for smaller CRs by David by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/236
* Adding in Dirichlet allocation partitioner by emersodb in https://github.com/VectorInstitute/FL4Health/pull/237
* Expanding ClientCheckpointModule to accept checkpointer sequences by emersodb in https://github.com/VectorInstitute/FL4Health/pull/239
* Quick update for partitioner to also get a prior rather than sampling by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/242
* PR2: Update mkmmd loss by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/169
* Bump pypa/gh-action-pypi-publish from 1.10.1 to 1.10.2 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/244
* PR1: Add mkmmd loss by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/168
* Nnunet server checkpointing by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/241
* Revert "Nnunet server checkpointing" by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/245
* Nnunet server checkpointing by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/246
* Adding in synthetic dataset generators based on the original FedProx paper by emersodb in https://github.com/VectorInstitute/FL4Health/pull/238
* Cleanup picai folder by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/247
* Fix launch scripts by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/248
* PR3: Add cifar10 experiments by sanaAyrml in https://github.com/VectorInstitute/FL4Health/pull/171
* Adaptive Ditto and MR-MTL by emersodb in https://github.com/VectorInstitute/FL4Health/pull/235
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/249
* Bump pypa/gh-action-pypi-publish from 1.10.2 to 1.10.3 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/250
* Adding fit end and evaluate end times in the client metrics by lotif in https://github.com/VectorInstitute/FL4Health/pull/253
* Fixing the tests for Mk-MMD loss such that they still pass properly on a GPU and CPU by emersodb in https://github.com/VectorInstitute/FL4Health/pull/255
* Reporting restructure by scarere in https://github.com/VectorInstitute/FL4Health/pull/254


**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.1.17...v0.2.0

There are several big additions in this release.
- We now support federated model merging without requiring training
- The server-side strategy FLASH is now supported
- Native support for FedPM has been implemented
- FENDA+Ditto is now available
- FedSimCLR is now supported for self-supervised contrastive learning.
- A ton of support for nnUnet is now in the library.

What's Changed
* Fix some bugs that slipped through in CR and trying to make type chec… by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/172
* Bump urllib3 from 2.2.1 to 2.2.2 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/176
* Bump scikit-learn from 1.4.1.post1 to 1.5.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/178
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/175
* Fixing Some Pip Audit Issues by emersodb in https://github.com/VectorInstitute/FL4Health/pull/180
* Fix picai channel ordering by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/179
* Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/177
* FLASH implementation by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/164
* Picai transfer learning by scarere in https://github.com/VectorInstitute/FL4Health/pull/174
* simple scripts for eval and pred with nnunet by scarere in https://github.com/VectorInstitute/FL4Health/pull/183
* FedSimCLR by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/173
* add setup_client call in get_parameters if not initialized by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/186
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/187
* Picai monai by scarere in https://github.com/VectorInstitute/FL4Health/pull/188
* Bump certifi from 2024.6.2 to 2024.7.4 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/190
* Update flwr 1.7 to 1.9 by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/189
* Fenda+Ditto model by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/182
* added epoch hook by scarere in https://github.com/VectorInstitute/FL4Health/pull/193
* Skin cancer dataset by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/185
* Bump sentry-sdk from 2.5.1 to 2.8.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/194
* Fl nnunet by scarere in https://github.com/VectorInstitute/FL4Health/pull/192
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/196
* Added epoch hook for lr scheduling and made client logs look better by scarere in https://github.com/VectorInstitute/FL4Health/pull/195
* Model Merge Functionality by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/191
* FedPM by yc7z in https://github.com/VectorInstitute/FL4Health/pull/197
* Ft/gemini scripts by fatemetkl in https://github.com/VectorInstitute/FL4Health/pull/206
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/203
* Nnunet test by scarere in https://github.com/VectorInstitute/FL4Health/pull/199
* Nnunet ensemble by scarere in https://github.com/VectorInstitute/FL4Health/pull/198
* Modified base server to accept sequences of checkpointers by scarere in https://github.com/VectorInstitute/FL4Health/pull/205
* Bump pypa/gh-action-pip-audit from 1.0.8 to 1.1.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/219
* Updating the README and bump Version Number by emersodb in https://github.com/VectorInstitute/FL4Health/pull/220
* Added progress bar and fixed bugs by scarere in https://github.com/VectorInstitute/FL4Health/pull/204
* decreased nltk version from ^3.8.1 to ^3.8.0 by scarere in https://github.com/VectorInstitute/FL4Health/pull/221

New Contributors
* scarere made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/174

**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.1.16...v0.1.17

What's Changed
* Address mypy issues for DPScaffoldClient by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/147
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/VectorInstitute/FL4Health/pull/148
* Small update to the readme to include new capabilities added by emersodb in https://github.com/VectorInstitute/FL4Health/pull/150
* Bump requests from 2.31.0 to 2.32.0 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/153
* Ignoring W and B vulnerability for now by emersodb in https://github.com/VectorInstitute/FL4Health/pull/154
* part 1 changes for adding training set capabilities for client side evaluation by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/151
* Adding Logo Stuff! by emersodb in https://github.com/VectorInstitute/FL4Health/pull/158
* nnUNet PICAI by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/155
* Part 2 changes for test dataset by Justinyangjy in https://github.com/VectorInstitute/FL4Health/pull/156
* Part 1: Extracting a small code refactor from Sana's other work by emersodb in https://github.com/VectorInstitute/FL4Health/pull/152
* Part 2: Creating New Loss Function Classes by emersodb in https://github.com/VectorInstitute/FL4Health/pull/159
* Part 3: Migrating Moon Clients to use new losses by emersodb in https://github.com/VectorInstitute/FL4Health/pull/160
* Part 4: Addition of a loss config and FLamby client simplification by emersodb in https://github.com/VectorInstitute/FL4Health/pull/161
* Part 5: Officially splitting FENDA and PerFCL clients by emersodb in https://github.com/VectorInstitute/FL4Health/pull/162
* Add tests for picai transforms and other test fixes by jewelltaylor in https://github.com/VectorInstitute/FL4Health/pull/165
* Part 6: Adding the Constrained FENDA client by emersodb in https://github.com/VectorInstitute/FL4Health/pull/163
* Bump tornado from 6.4 to 6.4.1 by dependabot in https://github.com/VectorInstitute/FL4Health/pull/166

New Contributors
* Justinyangjy made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/147
* pre-commit-ci made their first contribution in https://github.com/VectorInstitute/FL4Health/pull/148

**Full Changelog**: https://github.com/VectorInstitute/FL4Health/compare/v0.1.15...v0.1.16