Fractal-tasks-core

Latest version: v1.0.2

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1.0.3

* Support JSON-Schema generation for `Enum` task arguments (\749).
* Make JSON-Schema generation tools more flexible, to simplify testing (\749).

1.0.2

* Fix bug in plate metadata in MIP task (in the copy_ome_zarr_hcs_plate init function) (\736).

1.0.1

* Add support for converting 1536 well plates in cellvoyager converters (\715).
* Testing:
* Make validation of NGFF Zarr attributes more strict, in tests (\732).
* Development:
* Update poetry to 1.8.2 (\734).

1.0.0

* Update all tasks to use the new Fractal API from Fractal server 2.0 (\671)
* Provide new dev tooling to create Fractal manifest for new task API (\671)
* Add Pydantic models for OME-NGFF HCS Plate validation (\671)
* Breaking changes in core library:
* In `get_acquisition_paths` helper function of `NgffWellMeta`:
The dictionary now contains a list of paths as values, not single paths.
The NotImplementedError for multiple images with the same acquisition was removed.
* The `utils.get_table_path_dict` helper function was made private & changed its input parameters:
It's now `_get_table_path_dict(zarr_url: str)`
* Breaking changes in task sub-package:
* Rename tasks for increase clarity (\671 & \706).
* Changed registration tasks flow: Now 2 Compound tasks, 1 Parallel task (\671).
* Changed parameter names in registration tasks: acquisition instead of cycle (\719).
* Changed parameter names & defaults in illumination correction task: (\671).
* Now uses `illumination_profiles` instead of `dict_corr`.
* Changes default of background subtraction from 110 to 0.
* Dependencies:
* Add `filelock` (\718).

0.14.3

* Make Cellpose task work for non HCS plate OME-Zarr images (\659)
* Add option to Illumination Correction to specify the ROI table name (\665)

0.14.2

* Add custom normalization options to the Cellpose task (\650)
* Add more options to the Cellpose task to control model behavior (\650)
* For Cellpose task, switch to using Enums for `model_type` (see issue \401)

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