Fugassem

Latest version: v0.3.8

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0.3.8

* Fixed issues about the compatibility for python3.12
* Updated conda installation

0.3.7

* Updated nan imputation
* Improved correlation calculation
* Updated default setting
* Tweaked stratified_abundance function

0.3.6

* Added option for hyperparameter tuning RF

0.3.5

* Fixed issue when using '--bypass-coexp' option
* Tweaked default options for fugassem_generate_annotation_input utility
* Updated demo run
* Tweaked workflow name
* Updated prepare_annotation module

0.3.4

* Renamed options for '--go-mode'
* Added 'bypass-coexp' option to skip calculating coexpression
* Fixed issue when using '--bypass-prediction' option
* Added options for calculating feature vector

0.3.3

* Reorganize output folders
* Added a finalized combined results file
* Added stratified option for 'Terminal' or 'Strain' level
* Fixed issue when filtering based on prevalence
* Fixed issue when merging results

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