Ga4gh.cat-vrs

Latest version: v0.5.0

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1.0.0

This ballot pre-release is for PRC and community review use in moving Cat-VRS to an officially approved 1.0.0 trial use release.

What's changed
* Documentation improvements (how-tos, diagrams, reorganized outline, ...)
* Expanded examples and test cases
* Adoption of the GKS Maturity Model process and labels
* The following schemas have been promoted from `Draft` to `Trial Use`:
- CategoricalVariant
- DefiningAlleleConstraint
- DefiningLocationConstraint
- CopyCountConstraint
- ProteinSequenceConsequence
- CanonicalAllele

New Contributors
* jsstevenson made their first contribution in https://github.com/ga4gh/cat-vrs/pull/89
* brendanreardon made their first contribution in https://github.com/ga4gh/cat-vrs/pull/105

**Full Changelog**: https://github.com/ga4gh/cat-vrs/compare/1.0.0-ballot.2024-11.1...1.0.0-ballot.2025-03.1

1.0.0-snapshot.2025-02.3
What's Changed
* gks-core-doc-mod by larrybabb in https://github.com/ga4gh/cat-vrs/pull/118


**Full Changelog**: https://github.com/ga4gh/cat-vrs/compare/1.0.0-snapshot.2025-02.2...1.0.0-snapshot.2025-02.3

1.0.0-snapshot.2025-02.2
What's Changed
* Update to vrs 2.0.0 snapshot 2025 02.3 by larrybabb in https://github.com/ga4gh/cat-vrs/pull/114


**Full Changelog**: https://github.com/ga4gh/cat-vrs/compare/1.0.0-snapshot.2025-02.1...1.0.0-snapshot.2025-02.2

1.0.0-snapshot.2025-02.1
What's Changed
* docs: minor cleanup + add trial ballot link by jsstevenson in https://github.com/ga4gh/cat-vrs/pull/89
* docs: update rtd cat-vrs url by korikuzma in https://github.com/ga4gh/cat-vrs/pull/90
* 70 fix typo in categorical variant.members by DanielPuthawala in https://github.com/ga4gh/cat-vrs/pull/94
* Merge 1.0.0 ballot branch by larrybabb in https://github.com/ga4gh/cat-vrs/pull/102
* 91: documentation updates post November ballot by brendanreardon in https://github.com/ga4gh/cat-vrs/pull/105

New Contributors
* jsstevenson made their first contribution in https://github.com/ga4gh/cat-vrs/pull/89
* brendanreardon made their first contribution in https://github.com/ga4gh/cat-vrs/pull/105

**Full Changelog**: https://github.com/ga4gh/cat-vrs/compare/1.0.0-ballot.2024-11.1...1.0.0-snapshot.2025-02.1

1.0.0-ballot.2024-11.1
This ballot is a GKS community trial use review for the following classes:

- Categorical Variant [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/catvrs_model.html#categorical-variant)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/CategoricalVariant)]
- Defining Allele Constraint [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/catvrs_model.html#definingalleleconstraint)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/DefiningAlleleConstraint)]
- Defining Location Constraint [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/catvrs_model.html#defininglocationconstraint)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/DefiningLocationConstraint)]
- Copy Count Constraint [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/catvrs_model.html#copycountconstraint)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/CopyCountConstraint)]

As well as the following recipes:

- Canonical Allele [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/recipes.html#canonicalallele)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/CanonicalAllele)]
- Protein Sequence Consequence [[docs](https://cat-vrs.readthedocs.io/en/1.0.0-ballot.2024-11/concepts/recipes.html#proteinsequenceconsequence)][[schema](https://github.com/ga4gh/cat-vrs/blob/1.0.0-ballot.2024-11.1/schema/cat-vrs/json/ProteinSequenceConsequence)]

Join the discussion at 86!

**Changelog Since September Connect**: https://github.com/ga4gh/cat-vrs/compare/1.0.0-connect.2024-09.1...1.0.0-ballot.2024-11.1

1.0.0-connect.2024-09.1
This is a pre-release version prepared for the GA4GH 12th Plenary Connect (2024) in Melbourne, AUS.

All content in this version is at a DRAFT maturity level.

1.0.0.connect.2024-04.1
What's Changed
* add cat-vrs stickers by korikuzma in https://github.com/ga4gh/cat-vrs/pull/1
* Issue-2-update-index by DanielPuthawala in https://github.com/ga4gh/cat-vrs/pull/3
* resize image in index.rst by manish0kuniyal in https://github.com/ga4gh/cat-vrs/pull/7
* Create CODEOWNERS by ahwagner in https://github.com/ga4gh/cat-vrs/pull/8
* Bump jinja2 from 3.1.2 to 3.1.3 in /docs/source by dependabot in https://github.com/ga4gh/cat-vrs/pull/6
* Reorganizing documentation by ahwagner in https://github.com/ga4gh/cat-vrs/pull/9
* Bump jinja2 from 3.1.3 to 3.1.4 in /docs/source by dependabot in https://github.com/ga4gh/cat-vrs/pull/13

New Contributors
* korikuzma made their first contribution in https://github.com/ga4gh/cat-vrs/pull/1
* DanielPuthawala made their first contribution in https://github.com/ga4gh/cat-vrs/pull/3
* manish0kuniyal made their first contribution in https://github.com/ga4gh/cat-vrs/pull/7
* ahwagner made their first contribution in https://github.com/ga4gh/cat-vrs/pull/8
* dependabot made their first contribution in https://github.com/ga4gh/cat-vrs/pull/6

**Full Changelog**: https://github.com/ga4gh/cat-vrs/commits/1.0.0.connect.2024-04.1

0.5.0

What's Changed
* feat: add initial work for jupyter notebooks by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/15
* fix!: classes in recipes should not inherit from CategoricalVariant by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/17


**Full Changelog**: https://github.com/ga4gh/cat-vrs-python/compare/0.4.0...0.5.0

0.4.0

What's Changed
* feat!: update cat-vrs models to 1.0.0-ballot.2025-03.2 by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/13
* build: update ga4gh.vrs version by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/14


**Full Changelog**: https://github.com/ga4gh/cat-vrs-python/compare/0.3.0...0.4.0

0.3.0

What's Changed
* fix(build)!: update ga4gh.vrs/submodules + forbid extra attrs by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/11


**Full Changelog**: https://github.com/ga4gh/cat-vrs-python/compare/0.2.1...0.3.0

0.2.1

What's Changed
* fix(ci): exclude HEAD from git branch output in pypi release job by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/10


**Full Changelog**: https://github.com/ga4gh/cat-vrs-python/compare/0.2.0...0.2.1

0.2.0

What's Changed
* docs: add doi badge to readme by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/7
* feat!: update models to cat-vrs 1.0.0 trial review ballot by korikuzma in https://github.com/ga4gh/cat-vrs-python/pull/9


**Full Changelog**: https://github.com/ga4gh/cat-vrs-python/compare/0.1.1...0.2.0

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