Ga4gh.va-spec

Latest version: v0.2.0

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0.2.0

What's Changed
* feat!: update models to 1.0.0-ballot.2025-03.3 by korikuzma in https://github.com/ga4gh/va-spec-python/pull/19
* feat: add initial work for jupyter notebooks by korikuzma in https://github.com/ga4gh/va-spec-python/pull/20
* fix!: community models should not inherit from `Statement` / `EvidenceLine` by korikuzma in https://github.com/ga4gh/va-spec-python/pull/22


**Full Changelog**: https://github.com/ga4gh/va-spec-python/compare/0.2.0-a1...0.2.0

0.2.0a1

What's Changed
* feat!: update base and aac-2017 models to 1.0.0-snapshot.2025-02.1 by korikuzma in https://github.com/ga4gh/va-spec-python/pull/15
* fix: forbid extra attributes when additionalProperties is set to False by korikuzma in https://github.com/ga4gh/va-spec-python/pull/17


**Full Changelog**: https://github.com/ga4gh/va-spec-python/compare/0.2.0-a0...0.2.0-a1

0.2.0a0

What's Changed
* docs: add doi badge to readme by korikuzma in https://github.com/ga4gh/va-spec-python/pull/9
* feat!: add base and aac-2017 models from 1.0.0-ballot.2024-11.2 release by korikuzma in https://github.com/ga4gh/va-spec-python/pull/14


**Full Changelog**: https://github.com/ga4gh/va-spec-python/compare/0.1.1...0.2.0-a0

0.1.1

What's Changed
* fix: cohort should be a study group by jsstevenson in https://github.com/ga4gh/va-spec-python/pull/7
* docs: update description in readme by korikuzma in 696fbc4c416c9a5b89edfde891d0a80c00f34a77


**Full Changelog**: https://github.com/ga4gh/va-spec-python/compare/0.1.0...0.1.1

0.1.0

What's Changed
* chore: add boilerplate files by korikuzma in https://github.com/ga4gh/va-spec-python/pull/2
* cicd: update action deps by jsstevenson in https://github.com/ga4gh/va-spec-python/pull/5
* feat: add va spec pydantic models by korikuzma in https://github.com/ga4gh/va-spec-python/pull/6

New Contributors
* korikuzma made their first contribution in https://github.com/ga4gh/va-spec-python/pull/2
* jsstevenson made their first contribution in https://github.com/ga4gh/va-spec-python/pull/5

**Full Changelog**: https://github.com/ga4gh/va-spec-python/commits/0.1.0

1.0.0-ballot.2025-03.3
What's Changed
* fix: `membershipOperator` and `conditions`/`therapies` should be required by korikuzma in https://github.com/ga4gh/va-spec/pull/309
* fix: resolve typos by korikuzma in https://github.com/ga4gh/va-spec/pull/310
* docs: add more info on VA-Spec Python by korikuzma in https://github.com/ga4gh/va-spec/pull/311
* chore: bump va-spec ballot version by korikuzma in https://github.com/ga4gh/va-spec/pull/312
* Docs update v2 by larrybabb in https://github.com/ga4gh/va-spec/pull/314


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2025-03.2...1.0.0-ballot.2025-03.3

1.0.0-ballot.2025-03.2
What's Changed
* Add AAC constraints to therapeutic-response-study-statement-profile-s… by mbrush in https://github.com/ga4gh/va-spec/pull/304


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2025-03.1...1.0.0-ballot.2025-03.2

1.0.0-ballot.2025-03.1
[Product Documentation ](https://va-ga4gh.readthedocs.io/en/1.0.0-ballot.2025-03/index.html) | [Schemas](https://github.com/ga4gh/va-spec/tree/1.0.0-ballot.2025-03/schema/va-spec) | [Discussions](https://github.com/ga4gh/va-spec/discussions/303)

Dates to Remember!
- The ballot review period will begin on **Tuesday, March 4, 2025** and close on **Friday, April 11, 2025**.


1.0.0-snapshot.2025-02.2
What's Changed
* Update snapshot branch by larrybabb in https://github.com/ga4gh/va-spec/pull/295
* Docs merge to snapshot by larrybabb in https://github.com/ga4gh/va-spec/pull/297


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-snapshot.2025-02.1...1.0.0-snapshot.2025-02.2

1.0.0-snapshot.2025-02.1
What's Changed
* docs: fix some typos/grammatical errors by jsstevenson in https://github.com/ga4gh/va-spec/pull/237
* Documentation updates to support late shift to using Propositions in Statements by mbrush in https://github.com/ga4gh/va-spec/pull/235
* updated domain-entities to complete links needed for remaining TU links. by larrybabb in https://github.com/ga4gh/va-spec/pull/239
* chore: pull in 1.0.0 ballot.2024-11 changes by korikuzma in https://github.com/ga4gh/va-spec/pull/271
* feat!: update submodules to point to 2025-02 snapshots by korikuzma in https://github.com/ga4gh/va-spec/pull/272
* fix: add `oneOf` to `StudyResult` by korikuzma in https://github.com/ga4gh/va-spec/pull/273
* Bump jinja2 from 3.1.4 to 3.1.5 in /docs/source by dependabot in https://github.com/ga4gh/va-spec/pull/242
* Fix 1.0.0 snapshot.2025 02.1 references by korikuzma in https://github.com/ga4gh/va-spec/pull/274
* fix: use 1.0.0-snapshot.2025-02.1 instead of 1.x references by korikuzma in https://github.com/ga4gh/va-spec/pull/275

New Contributors
* jsstevenson made their first contribution in https://github.com/ga4gh/va-spec/pull/237

**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2024-11.2...1.0.0-snapshot.2025-02.1

1.0.0-ballot.2024-11.2
This is an addendum to [1.0.0 Trial Use Review Ballot (November 2024)](https://github.com/ga4gh/va-spec/releases/tag/1.0.0-ballot.2024-11.1). The following additional classes have been reviewed, revised, and advanced for Trial Use consideration:

Domain-agnostic data classes
- Agent
- Contribution

Please contribute to the discussion in 234.

**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2024-11.1...1.0.0-ballot.2024-11.2

1.0.0-ballot.2024-11.1
This ballot is a GKS community trial use review specifically for the listed data classes.

Domain-agnostic data classes

- Statement
- EvidenceLine
- Document
- Method
- DataSet
- StudyGroup

Domain-specific base profiles:

- VariantPathogenicityProposition
- VariantOncogenicityProposition
- VariantDiagnosticProposition
- VariantPrognosticProposition
- VariantTherapeuticResponseProposition
- ExperimentalVariantFunctionalImpactProposition
- ExperimentalVariantFunctionalImpactStudyResult
- CohortAlleleFrequencyStudyResult

Domain-specific data classes:

- Condition
- TraitSet
- TherapyGroup
- Therapeutic

1.0.0-connect.2024-09.1
This is a pre-release version prepared for the GA4GH 12th Plenary Connect (2024) in Melbourne, AUS.

All content in this version is at a DRAFT maturity level.

1.0.0.connect.2024-04.1
This is a pre-release version which was presented at GA4GH Connect 2024 in Ascona, CH

Some of the key items included are:
* Draft of the Core Information Model (Core-IM)
* Cohort Allele Frequency Profile
* Pathogenicity Profile
* Therapeutic Response Profile
* Oncogenicity Profile

All content in this version is at a DRAFT maturity level.

1.0.0-ballot.2025-03.3
What's Changed
* fix: `membershipOperator` and `conditions`/`therapies` should be required by korikuzma in https://github.com/ga4gh/va-spec/pull/309
* fix: resolve typos by korikuzma in https://github.com/ga4gh/va-spec/pull/310
* docs: add more info on VA-Spec Python by korikuzma in https://github.com/ga4gh/va-spec/pull/311
* chore: bump va-spec ballot version by korikuzma in https://github.com/ga4gh/va-spec/pull/312
* Docs update v2 by larrybabb in https://github.com/ga4gh/va-spec/pull/314


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2025-03.2...1.0.0-ballot.2025-03.3

1.0.0-ballot.2025-03.2
What's Changed
* Add AAC constraints to therapeutic-response-study-statement-profile-s… by mbrush in https://github.com/ga4gh/va-spec/pull/304


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2025-03.1...1.0.0-ballot.2025-03.2

1.0.0-ballot.2025-03.1
[Product Documentation ](https://va-ga4gh.readthedocs.io/en/1.0.0-ballot.2025-03/index.html) | [Schemas](https://github.com/ga4gh/va-spec/tree/1.0.0-ballot.2025-03/schema/va-spec) | [Discussions](https://github.com/ga4gh/va-spec/discussions/303)

Dates to Remember!
- The ballot review period will begin on **Tuesday, March 4, 2025** and close on **Friday, April 11, 2025**.


1.0.0-snapshot.2025-02.2
What's Changed
* Update snapshot branch by larrybabb in https://github.com/ga4gh/va-spec/pull/295
* Docs merge to snapshot by larrybabb in https://github.com/ga4gh/va-spec/pull/297


**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-snapshot.2025-02.1...1.0.0-snapshot.2025-02.2

1.0.0-snapshot.2025-02.1
What's Changed
* docs: fix some typos/grammatical errors by jsstevenson in https://github.com/ga4gh/va-spec/pull/237
* Documentation updates to support late shift to using Propositions in Statements by mbrush in https://github.com/ga4gh/va-spec/pull/235
* updated domain-entities to complete links needed for remaining TU links. by larrybabb in https://github.com/ga4gh/va-spec/pull/239
* chore: pull in 1.0.0 ballot.2024-11 changes by korikuzma in https://github.com/ga4gh/va-spec/pull/271
* feat!: update submodules to point to 2025-02 snapshots by korikuzma in https://github.com/ga4gh/va-spec/pull/272
* fix: add `oneOf` to `StudyResult` by korikuzma in https://github.com/ga4gh/va-spec/pull/273
* Bump jinja2 from 3.1.4 to 3.1.5 in /docs/source by dependabot in https://github.com/ga4gh/va-spec/pull/242
* Fix 1.0.0 snapshot.2025 02.1 references by korikuzma in https://github.com/ga4gh/va-spec/pull/274
* fix: use 1.0.0-snapshot.2025-02.1 instead of 1.x references by korikuzma in https://github.com/ga4gh/va-spec/pull/275

New Contributors
* jsstevenson made their first contribution in https://github.com/ga4gh/va-spec/pull/237

**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2024-11.2...1.0.0-snapshot.2025-02.1

1.0.0-ballot.2024-11.2
This is an addendum to [1.0.0 Trial Use Review Ballot (November 2024)](https://github.com/ga4gh/va-spec/releases/tag/1.0.0-ballot.2024-11.1). The following additional classes have been reviewed, revised, and advanced for Trial Use consideration:

Domain-agnostic data classes
- Agent
- Contribution

Please contribute to the discussion in 234.

**Full Changelog**: https://github.com/ga4gh/va-spec/compare/1.0.0-ballot.2024-11.1...1.0.0-ballot.2024-11.2

1.0.0-ballot.2024-11.1
This ballot is a GKS community trial use review specifically for the listed data classes.

Domain-agnostic data classes

- Statement
- EvidenceLine
- Document
- Method
- DataSet
- StudyGroup

Domain-specific base profiles:

- VariantPathogenicityProposition
- VariantOncogenicityProposition
- VariantDiagnosticProposition
- VariantPrognosticProposition
- VariantTherapeuticResponseProposition
- ExperimentalVariantFunctionalImpactProposition
- ExperimentalVariantFunctionalImpactStudyResult
- CohortAlleleFrequencyStudyResult

Domain-specific data classes:

- Condition
- TraitSet
- TherapyGroup
- Therapeutic

1.0.0-connect.2024-09.1
This is a pre-release version prepared for the GA4GH 12th Plenary Connect (2024) in Melbourne, AUS.

All content in this version is at a DRAFT maturity level.

1.0.0.connect.2024-04.1
This is a pre-release version which was presented at GA4GH Connect 2024 in Ascona, CH

Some of the key items included are:
* Draft of the Core Information Model (Core-IM)
* Cohort Allele Frequency Profile
* Pathogenicity Profile
* Therapeutic Response Profile
* Oncogenicity Profile

All content in this version is at a DRAFT maturity level.

Links

Releases

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