geneplexus Changelog

2.0.4

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v2.0.3...v2.0.4
Changed from last version due to README.md pointing to wrong data

2.0.3

What's Changed
* Bump statsmodels from 0.14.2 to 0.14.4 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/357
* Bump pytest-order from 1.1.0 to 1.3.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/356
* Bump pytest from 7.4.2 to 8.3.4 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/355
* Bump requests-mock from 1.11.0 to 1.12.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/354
* Fixes for changing bug in scaling by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/368
* Bump pyyaml from 6.0.1 to 6.0.2 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/360
* Bump pytest-cov from 4.1.0 to 6.0.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/361
* Bump setuptools from 75.5.0 to 75.8.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/362
* Bump requests from 2.31.0 to 2.32.3 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/363
* changes to Zenodo downloader by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/372
* Bump pystow from 0.6.1 to 0.7.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/369
* Bump tox from 4.23.2 to 4.24.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/370
* Bump scikit-learn from 1.6.0 to 1.6.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/371

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v2.0.2...v2.0.3

2.0.2

What's Changed
* updated package version in places by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/353
* update v2.0.1 to v2.0.2 by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/358

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v2.0.1...v2.0.2

2.0.1

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v2.0.0...v2.0.1

Update for PYPI project description from README.md. Major release changes in v2.0.0

2.0.0

What's Changed
* Add sp_trn and sp_tst options by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/301
* change making sim dfs only from GSC by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/307
* basic api runs with all parameters by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/309
* added check if Entrez might not be correct species by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/311
* Mondo and prop by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/313
* Api functionality updates by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/325
* Zenodo and downloads by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/328
* Fixes to setters and custom by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/330
* multiple updates to CLI by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/331
* updated tst to res and code comments by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/332
* Fix the pytests by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/333
* updated the example directory by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/337
* remove custom from read the docs by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/338
* Pytests, package builds and documentation by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/339
* added parameter availablity tables by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/342
* Fix how parameters are set by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/343
* min positives for training by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/345
* Added FAQs section by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/346
* updated the faqs by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/347
* Bump pystow from 0.5.0 to 0.6.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/348
* Bump pytest-mock from 3.11.1 to 3.14.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/310
* Bump scikit-learn from 1.3.0 to 1.6.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/349
* Bump tqdm from 4.65.0 to 4.67.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/350

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v1.0.1...v2.0.0

2.0.0.dev

What's Changed
* Add sp_trn and sp_tst options by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/301
* change making sim dfs only from GSC by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/307
* basic api runs with all parameters by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/309
* added check if Entrez might not be correct species by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/311
* Mondo and prop by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/313
* Api functionality updates by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/325
* Zenodo and downloads by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/328
* Fixes to setters and custom by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/330
* multiple updates to CLI by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/331
* updated tst to res and code comments by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/332
* Fix the pytests by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/333
* updated the example directory by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/337
* remove custom from read the docs by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/338
* Pytests, package builds and documentation by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/339
* added parameter availablity tables by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/342
* Fix how parameters are set by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/343
* min positives for training by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/345
* Added FAQs section by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/346
* updated the faqs by ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/347
* Bump pystow from 0.5.0 to 0.6.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/348
* Bump pytest-mock from 3.11.1 to 3.14.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/310
* Bump scikit-learn from 1.3.0 to 1.6.0 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/349
* Bump tqdm from 4.65.0 to 4.67.1 by dependabot in https://github.com/krishnanlab/PyGenePlexus/pull/350

**Full Changelog**: https://github.com/krishnanlab/PyGenePlexus/compare/v1.0.1...v2.0.0.dev

Geneplexus

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