- Update to HTTPS download of GO and Pathway Commons resources.
1.6.1
- Bugfix to ensure same gene ordering in `genewalk_results.csv` as input gene list
1.6.0
- GeneWalk can be installed using conda. - Require GeneWalk gensim version >= 4.0 This reduces GeneWalk's run time. - Make GeneWalk compatible with pandas version >= 1.3.0. - Support for Python v3.8+, no longer v3.6 and 3.7.
1.5.3
- Update to make GeneWalk compatible with latest human GO annotations release 2.2. This affects GeneWalk with all options except `--network_source sif_annot` or `sif_full`: if no earlier annotation file is present in the resources folder, this latest `human_goa.gaf` file will be downloaded and used.
1.5.2
- Require to use version gensim<4. This is a temporary fix to maintain compatibility of GeneWalk with gensim 3.x . In the future GeneWalk will be updated to become compatible with gensim 4. - Added CLI smoketest for `--network_source sif_annot` to automated testing.
1.5.1
- Minor bug fix that affected only the custom input network options `sif_annot` and `sif_full`: added them to the `--network_source` input argument choice list.