Ges

Latest version: v1.1.1

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1.1.1

- Replaced calls to np.Inf by np.inf to ensure compatibility with numpy>=2
- Updated doctest in ges.main
- Fixed README (i.e. ges.main vs. ges.ges) and documented `iterate` parameter.

1.1.0

- Fixed bug: The calls ges.fit and ges.fit_bic now return the total score, instead of the total score change wrt. the empty graph.
- Set a minimum value (float machine epsilon) for the estimated noise term variances. For very low sample sizes noise-term variances can be estimated as zero because of machine precision, breaking the logarithm in the likelihood computation.
- When checking if an operator improved the score, require it to be greater than a threshold (instead of zero); because of numerical issues, two opposing turn operators (idemptotent when applied together) may both return a score slightly over-zero; as a result the algorithm gets stuck in a loop.

1.0.6

- Updated MANIFEST.in file to include readme and license.

1.0.5

- ges.fit now allows for an optional parameter `completion_algorithm` which allows for a user-defined algorithm to go from PDAG to CPDAG after the application of each operator.
- removed deprecated use of np.bool

1.0.4

- Both ges.fit and ges.fit_bic now allow for an optional parameter `iterate`, to indicate whether the given phases should be iterated more than once. Defaults to `False` to maintain backwards compatibility.
- Adapted tests.

1.0.3

- Fixed bug in "raw" computation of Gaussian observational score + expanded tests
- Ran autopep on all files, removed unused imports, etc.
- Expanded docstrings and doctests.
- Changed ges.py to main.py to avoid module/package name conflict.
v1.0.2, 2021-02-05 -- Adapted testing code to new sempler version 0.2.0.
v1.0.1, 2021-01-24 -- Fixed project url and license on setup.py, added changelog.
v1.0.0, 2021-01-24 -- Initial release.

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