Glue-genes

Latest version: v1.2.2

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1.2.2

<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed

New Features

- Make DGE plugin more robust to changing or deleting subsets by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/58

**Full Changelog**: https://github.com/gluesolutions/glue-genes/compare/v1.2.1...v1.2.2

1.2.1

<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed

- Require glue-qt > 0.3 to get region display
- Update documentation by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/56

**Full Changelog**: https://github.com/gluesolutions/glue-genes/compare/v1.2.0...v1.2.1

1.2.0

<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed

New Features

- Support for loading and analyzing spatial transcriptomics data
- Support for display regions on images

Bug Fixes

- Fix ome_zarr reader to work for any number of supported dims by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/48

Other Changes

- Add tifffile file reader by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/49
- Allow DEG plugin to run versus rest (all other obs) by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/53
- Change differential gene expression plugin to be live-updating by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/54

**Full Changelog**: https://github.com/gluesolutions/glue-genes/compare/v1.1.0...v1.2.0

1.1.0

<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed

- Support for spatial transcriptomics
- Basic Zarr and OME-Zarr readers
- Spaceranger data importer
- Optional OpenSlide data loader
- New MultiResolutionData object for tiled data
- Remove need for custom startup action
- New SyncComponent to designate components that are get up-to-date with subsets
- Uses glue-for-glue-genes rather than glue-core

Other Changes

- Update installation recommendation by jfoster17 in https://github.com/gluesolutions/glue-genes/pull/23
- Update QComboBox to work with Qt6
- Store uns metadata and deal with named (DataFrame) obsm arrays
- Improve tests
- Make var names unique in anndata
- Make subset listener more robust
- Bug-fixes and naming code improvements

**Full Changelog**: https://github.com/gluesolutions/glue-genes/compare/v1.0.1...v1.1.0

1.0

Initial Release of glue genes as an integrated package.

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