* Remove `tempdir` dependency so Python > 3.6 can be used * create now supports `--no_tree` to build a package that is DIAMOND-only. * graftm: Add --diamond_performance_parameters. * bugfixes.
Thanks to AroneyS for help with some of these.
0.13.1
* Update to Python-3, Python-2 no longer supported * Replace fxtract with mfqe * create: Accept --alignment and --hmm begrudgingly * create: Increase the recursion limit, for large trees * accept interleaved input (Thanks to jmeppley ) * documentation and bug fixes.
0.12.2
* Fix bug where (rarely) using amino acid HMMs where the alignments were split was not handled correctly. Now do not split when aligning to amino acid models.
0.12.1
* Fix bug in output jplace for certain paired reads
0.12.0
* Several small bug fixes * create: Allow dereplication levels > 7 * update: Add option to regenerate diamond databases
0.11.1
* test data now included in PyPI distribution tar.gz