Hpvsim

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- Updates how HPV prognoses are re-evaluated for WLWH
- Fixes CD4 reconstitution trajectory so that it plateaus before quadratic starts decreasing
- Fixes ART coverage so that it's now by age, sex, and time
- Fixes assignment of HIV mortality based upon ART coverage
- Removes HIV-mortality from background mortality
- Small fix to enable calibration to HIV-stratified data
- Adds a more robust data downloading method and renamed ``get_data()`` to ``download_data()``; updated data version to 1.4
- *Github info* PR `652 <https://github.com/amath-idm/hpvsim/pull/652>`__

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- Modifies DALY analyzer to output YLLL, YLD and DALYs
- *Github info* PR `659 <https://github.com/amath-idm/hpvsim/pull/659>`__

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- Adds in relative transmissibility attribute to people that can be modified by vaccination or treatment
- *Github info* PR `643 <https://github.com/amath-idm/hpvsim/pull/658>`__

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- Simplifies natural history model by compressing CIN grades
- Changes the way HPV progression is modeled so that there is a probability of developing CIN based upon duration of precin and probability of cancer based upon duration of cancer (based upon Rodriguez et al. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3705579/)
- Adds support for pre-calibration explorations
- Improvements to networks, including clustering functionality, support for different distributions for male and female partners and for differing concurrency rates, and changes to default partnership durations
- Exposes a parameter for specifying the sex ratio of a population
- Fixes plotting issue with tutorial
- Updates filtering for tests that are not genotype-specific
- *Github info* PR `643 <https://github.com/amath-idm/hpvsim/pull/643>`__

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- Updates ``sim.summary`` to have more useful information
- *Github info* PR `618 <https://github.com/amath-idm/hpvsim/pull/618>`__

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- Fixes plotting issue with MultiSims and Jupyter notebooks
- Allows scenarios to be run fully in parallel
- *Github info* PR `614 <https://github.com/amath-idm/hpvsim/pull/614>`__