Hu-neuro-pipeline

Latest version: v0.8.5

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0.8.5

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🐛 Bug fixes
* Use PyPI's new "trusted publisher" for authentication instead of API token by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/175


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.4...v0.8.5

0.8.4

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🎉 Exciting new features
* Epochs that are `'TOO_SHORT'` to fit into the recording get dropped from epochs and log files with a warning by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/168
🐛 Bug fixes
* Integer coercion warning now only shows up if `ica_n_components` isn't `int` already by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/167
* Warn but continue when epochs selected for averaging are empty (e.g., all epochs were rejected) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/172
📄 Documentation
* Small improvements to the installation instructions by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/169
* Improve bits of text in the UCAP example by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/173


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.3...v0.8.4

0.8.3

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🐛 Bug fixes
* Ensure that `components['roi']` is always a list by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/160
* Fix error when `.csv` log file is passed as a `pathlib.Path` by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/162
* Fix error when trying to save `Path`/`range` to config by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/164


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.2...v0.8.3

0.8.2

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🎉 Exciting new features
* Allow list-like types (not just list) for some input arguments by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/157
* Support `pathlib.Path` objects as input and output directories by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/158


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.1...v0.8.2

0.8.1

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🐛 Bug fixes
* Fix import error with new MNE version 1.6.0 by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/154


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.0...v0.8.1

0.8.0

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🛠 Breaking changes
* Support different raw EEG input file types beyond BrainVision (Note: Input argument `vhdr_files` is now called `raw_files`!) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/125
* Change default for `ica_n_components` from `0.99` (i.e., 99% explained variance) to `None` (all components, usually number of channels minus one) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/136
🎉 Exciting new features
* Add functions to download sample data from the ERP CORE dataset by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/122
* Support processing of non-BrainVision / non-Abdel Rahman Lab data (e.g., ERP CORE data) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/127
* Keep audio and pulse channels that are not in the montage as "misc" type by kirstenstark in https://github.com/alexenge/hu-neuro-pipeline/pull/143
* Add input argument `ref_channels` for custom re-referencing (`'average'` remains the default) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/146
* Improve dataset fetchers (offline mode, `path` argument, custom list of participants) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/149
🐛 Bug fixes
* Rename functions for getting sample datasets (now `datasets.get_ucap()` and `datasets.get_erpcore()`) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/129
* Make sure that automatic matching via `triggers_column` works for non-BrainVision data by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/138
* Fix bad epoch rejection for epochs that already have bad epoch markers (e.g., `NO_DATA`) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/140
* Fix missing manifest files that broke the dataset fetchers by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/151
📄 Documentation
* Add ERP CORE example (processing N400 data in Python) to docs by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/130
* Switch to MyST-NB (instead of nbsphinx) for rendering doc examples by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/132
* Move documentation source files into new `doc/source/` sub-directory by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/134
* Fix some issues in the docs (wrong input arguments, remove tables of content) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/152


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.7.0...v0.8.0

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