Hydrogels

Summary

- Protocols for the vitrimer generation are now up-to-date
- Dockerfile and automated publishing to DockerHub
- Loading simulations from systems using checkpoints instead of manual positions

What's Changed
* Dev trajectory by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/40
* Add protocols for enzymatic degradation of vitrimer generated microgels by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/41
* Docker by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/42


**Full Changelog**: https://github.com/debeshmandal/hydrogels/compare/v1.1.0...v1.1.1

Summary

New bond breaking reaction schemes and `StructuralReaction` class for customisation and registration of reactions

What's Changed
* Fix potential by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/29
* Dev new reaction by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/30
* Enzymatic examples by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/31
* some final edits to bond breaking by debeshmandal in https://github.com/debeshmandal/hydrogels/pull/32


**Full Changelog**: https://github.com/debeshmandal/hydrogels/compare/v1.0.0-alpha...v1.1.0

Hydrogels has now been used to create a workflow for generating, analysing and reacting microgel spheres. Seemless installation has been implemented ensuring that the package is self-contained in a single location (previously two sets of packages were installed, and were not removed upon `pip remove hydrogels`). Python 3.9 is now supported on both Linux and MacOS. Windows is not supported currently since `readdy` is not available on Windows.

The next update will include a command-line-based service architecture to achieve this.

For now, the protocols folder in the Github (https://github.com/debeshmandal/hydrogels) repository will be updated up until the release of v1.1.0 which will involve these CLI-based services

Summary

- Framework for analytical models
- Framework for Lennard Jones analytical model and simulation using ReaDDy
- Deployment to MacOS and ManyLinux OS systems
- `hydrogels` and `hydrogelsbindings` are currently being installed but this should change in a future version
- Only Python versions 3.6, 3.7 and 3.8 are supported

Still trying to fix mac deploy