Ibaqpy

What's Changed
* Update data processing by enriquea in https://github.com/bigbio/ibaqpy/pull/90
* Added cli option for batch correction by enriquea in https://github.com/bigbio/ibaqpy/pull/91
* minor update with figure description by ypriverol in https://github.com/bigbio/ibaqpy/pull/92
* Dev by ypriverol in https://github.com/bigbio/ibaqpy/pull/93
* Added support for anndata by enriquea in https://github.com/bigbio/ibaqpy/pull/94
* minor refinements by ypriverol in https://github.com/bigbio/ibaqpy/pull/95
* added logging output and description by enriquea in https://github.com/bigbio/ibaqpy/pull/96
* Dev by ypriverol in https://github.com/bigbio/ibaqpy/pull/97
* 0.0.3 -> 0.0.4 version updated by ypriverol in https://github.com/bigbio/ibaqpy/pull/98
* Polish CLI by mobiusklein in https://github.com/bigbio/ibaqpy/pull/99
* Clean code, remove print -> logger, add all authors. by ypriverol in https://github.com/bigbio/ibaqpy/pull/100
* Dev by ypriverol in https://github.com/bigbio/ibaqpy/pull/101


**Full Changelog**: https://github.com/bigbio/ibaqpy/compare/v0.0.3...v0.0.4

What's Changed
* version 0.0.2 increased. by ypriverol in https://github.com/bigbio/ibaqpy/pull/20
* Polars by ypriverol in https://github.com/bigbio/ibaqpy/pull/21
* version 0.0.2 increased. by ypriverol in https://github.com/bigbio/ibaqpy/pull/22
* Polars by ypriverol in https://github.com/bigbio/ibaqpy/pull/23
* add QC profile for each step by WangHong007 in https://github.com/bigbio/ibaqpy/pull/24
* Added required test scripts to perform the following tasks: by enriquea in https://github.com/bigbio/ibaqpy/pull/19
* Normalized peptide intensities generated from MSstats using streaming processing by WangHong007 in https://github.com/bigbio/ibaqpy/pull/25
* Bugs fixed by WangHong007 in https://github.com/bigbio/ibaqpy/pull/26
* filter proteins didn't found in fasta by WangHong007 in https://github.com/bigbio/ibaqpy/pull/27
* make remove_low_frequency_peptides as a flag by WangHong007 in https://github.com/bigbio/ibaqpy/pull/28
* ibaqpy update by WangHong007 in https://github.com/bigbio/ibaqpy/pull/29
* Enable parquet streaming by WangHong007 in https://github.com/bigbio/ibaqpy/pull/30
* pre-update of ibaqpy by WangHong007 in https://github.com/bigbio/ibaqpy/pull/31
* Get protein accessions from multiple databases by WangHong007 in https://github.com/bigbio/ibaqpy/pull/32
* adapt to new pandas by WangHong007 in https://github.com/bigbio/ibaqpy/pull/33
* Temp PR for stream normalization by WangHong007 in https://github.com/bigbio/ibaqpy/pull/36
* Fix bugs and add quantile normalization considers NA values by WangHong007 in https://github.com/bigbio/ibaqpy/pull/37
* Major update of ibaqpy by WangHong007 in https://github.com/bigbio/ibaqpy/pull/45
* add mergeFractions by WangHong007 in https://github.com/bigbio/ibaqpy/pull/47
* update: doc by zprobot in https://github.com/bigbio/ibaqpy/pull/48
* benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/50
* update: ibaq by zprobot in https://github.com/bigbio/ibaqpy/pull/51
* optimize by zprobot in https://github.com/bigbio/ibaqpy/pull/52
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/53
* First iteration benchmark by ypriverol in https://github.com/bigbio/ibaqpy/pull/54
* Patch by ypriverol in https://github.com/bigbio/ibaqpy/pull/56
* small changes in benchmark by ypriverol in https://github.com/bigbio/ibaqpy/pull/55
* python black added by ypriverol in https://github.com/bigbio/ibaqpy/pull/57
* update: todo by zprobot in https://github.com/bigbio/ibaqpy/pull/58
* update by zprobot in https://github.com/bigbio/ibaqpy/pull/60
* Refactoring of the commandline by ypriverol in https://github.com/bigbio/ibaqpy/pull/59
* update: readme by zprobot in https://github.com/bigbio/ibaqpy/pull/61
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/62
* Minor changes in the README by ypriverol in https://github.com/bigbio/ibaqpy/pull/63
* Dev by ypriverol in https://github.com/bigbio/ibaqpy/pull/64
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/65
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/66
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/67
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/68
* update: benchmark by zprobot in https://github.com/bigbio/ibaqpy/pull/69
* ENTRAPMENT -> ENTRAP by ypriverol in https://github.com/bigbio/ibaqpy/pull/70
* update: ibaqpy by zprobot in https://github.com/bigbio/ibaqpy/pull/73
* update: test by zprobot in https://github.com/bigbio/ibaqpy/pull/75
* changes in dependencies by ypriverol in https://github.com/bigbio/ibaqpy/pull/74
* tpa by zprobot in https://github.com/bigbio/ibaqpy/pull/77
* major changes for package remove setup.py by ypriverol in https://github.com/bigbio/ibaqpy/pull/78
* little change by zprobot in https://github.com/bigbio/ibaqpy/pull/80
* update: variable by zprobot in https://github.com/bigbio/ibaqpy/pull/81
* Major refactoring of the structure of the project. by ypriverol in https://github.com/bigbio/ibaqpy/pull/79
* Add qodana CI checks by qodana-cloud in https://github.com/bigbio/ibaqpy/pull/83
* documenting code and functions. by ypriverol in https://github.com/bigbio/ibaqpy/pull/82
* update：doc by zprobot in https://github.com/bigbio/ibaqpy/pull/86
* update: doc by zprobot in https://github.com/bigbio/ibaqpy/pull/87
* Refactoring of static data and dispatch behavior, I/O streamlining by mobiusklein in https://github.com/bigbio/ibaqpy/pull/88
* Dev by ypriverol in https://github.com/bigbio/ibaqpy/pull/89

New Contributors
* enriquea made their first contribution in https://github.com/bigbio/ibaqpy/pull/19
* zprobot made their first contribution in https://github.com/bigbio/ibaqpy/pull/48
* qodana-cloud made their first contribution in https://github.com/bigbio/ibaqpy/pull/83
* mobiusklein made their first contribution in https://github.com/bigbio/ibaqpy/pull/88

**Full Changelog**: https://github.com/bigbio/ibaqpy/compare/0.0.2...v0.0.3

What's Changed
* Filter msstats by WangHong007 in https://github.com/bigbio/ibaqpy/pull/16
* Filter peptides with length < 7
* Filter proteins with less than 2 unique peptides.


**Full Changelog**: https://github.com/bigbio/ibaqpy/compare/0.0.1...0.0.2

First pre-release:

What's Changed
* Small changes by ypriverol in https://github.com/bigbio/ibaqpy/pull/1
* Peptide intensity tables script by ypriverol in https://github.com/bigbio/ibaqpy/pull/2
* minor changes to include compress in the normalization tool by ypriverol in https://github.com/bigbio/ibaqpy/pull/3
* Update by ypriverol in https://github.com/bigbio/ibaqpy/pull/5
* q-values when Posterior Error probability by ypriverol in https://github.com/bigbio/ibaqpy/pull/6
* fixed some bugs and adapted to TMT by daichengxin in https://github.com/bigbio/ibaqpy/pull/7
* Update peptide_file_generation.py by daichengxin in https://github.com/bigbio/ibaqpy/pull/8
* Compute TPA and protein concentration by WangHong007 in https://github.com/bigbio/ibaqpy/pull/10
* Preliminary update by WangHong007 in https://github.com/bigbio/ibaqpy/pull/11

New Contributors
* ypriverol made their first contribution in https://github.com/bigbio/ibaqpy/pull/1
* daichengxin made their first contribution in https://github.com/bigbio/ibaqpy/pull/7
* WangHong007 made their first contribution in https://github.com/bigbio/ibaqpy/pull/10

**Full Changelog**: https://github.com/bigbio/ibaqpy/commits/0.0.1