What's Changed
* Resurrect tests for columnfile.py, correct np.int by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/206
* This lets you use a mask covering most of the image by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/207
* Parallelised iradon by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/208
* dataset.py file structure enforcement and MLEM mask by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/209
* Update release continuous integration by t20100 in https://github.com/FABLE-3DXRD/ImageD11/pull/210
* This should fix ImageD11_gui not opening by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/211
* Python 3.12 support by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/214
* Try to get rid of the fork problem by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/216
* Point by point scanner for sinograms by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/217
* Added output_size support to MLEM by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/218
* repair the multiprocessing thing? by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/220
* lima_segmenter to use fork free multiprocessing by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/221
* No more forks for the peak properties. by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/223
* self.shape is undefined by kif in https://github.com/FABLE-3DXRD/ImageD11/pull/224
* Scanning and box-beam 3DXRD notebooks, and a few other changes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/225
* ImageD11_gui fixes and some scanning notebooks updates by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/226
* Many notebook changes, better sinogram position fitting by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/227
* Lots of small annoying notebook changes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/228
* secret spacegroup number hidden option by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/229
* secret spacegroup number hidden option by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/230
* secret spacegroup number hidden option by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/231
* secret spacegroup number hidden option by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/232
* Correct negative cosine_tol in indexing notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/235
* Weekend feedback for scanning notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/237
* Local point-by-point indexing notebook by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/238
* Improve home directory determination in PBP notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/240
* fixes 236 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/239
* Optionally scale sinogram rows by ring current by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/242
* Removing functions from processing notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/251
* Worked out where to move functions to by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/257
* Speed up and example notebook by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/260
* Moving many functions from nbgui into ImageD11 by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/261
* speedup by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/262
* Correct MLEM padding bug by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/264
* fix CI by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/263
* assign peaks to rings by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/266
* limit threads and do not overwrite geometry by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/267
* Move peak filtration stuff to new peakselect module by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/268
* Sinogram class completed by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/271
* Geometry module and orix interface by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/272
* fixup: missing import and docstring by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/273
* reduce atol/rtol on tests by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/274
* Remove implied units (microns vs mm for dty vs diffty) by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/275
* Geometry overhaul (+tests), update all notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/276
* Unitcell: Try to cast symmetry to int during init by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/277
* Speed up gord, inds for sinogram peak assignments by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/279
* Fix bug in columnfile.updateGeometry by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/280
* Add Astra support by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/283
* Release workflow: Increase verbosity of cibuildwheel by t20100 in https://github.com/FABLE-3DXRD/ImageD11/pull/284
* Fixups by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/286
* Issue285 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/287
* closes 248 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/288
* Add PandasColumnfile subclass of columnfile by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/290
* Bugfix PandasColumnfile by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/292
* Attempt to repair attribute access fix 289 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/293
* mmap colfile, and cache sin/cos for pbp, removing multiproc shm by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/294
* Remove shm from point by point by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/295
* fix samrx samry bug by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/296
* do_index issue by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/298
* Load via the init method because of the update paths bug by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/299
* typo by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/300
* Fixes for latest pbp by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/301
* fetch_data.py (also PBP geometry fix) by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/303
* Update config.yml by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/304
* Notebook bugfixes and simplifications by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/305
* Compacted the 0_S3DXRD notebook by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/306
* Fix typo in notebook 0 by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/307
* Replace MLEM cluster method with ASTRA cluster method by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/308
* wip 0_S3DXRD gui by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/309
* Many many scanning notebook changes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/310
* silicon calibration for nscope by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/311
* Fix CI by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/312
* cleanup by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/314
* Add B factor & allow all peaks to be indexed by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/316
* Box-beam and PBP scanning notebook overhauls by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/317
* Add lab reference frame to scanning geometry by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/319
* Fix some small notebook annoyances by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/320
* Support for extended data analysis parameters by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/321
* TensorMap and multiphase support (and bugfixes) by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/322
* eps support in TensorMap by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/323
* frelon peaksearch refactor by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/326
* hkl labels for grain sinogram, also moment sinograms by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/331
* Monitor for normalisation of a pk2d or cf2d by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/332
* fix monitor bug by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/336
* do not square the sum_intensity by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/337
* Scanning 3DXRD Strain refinement by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/339
* Update release workflow to use macos-13 by t20100 in https://github.com/FABLE-3DXRD/ImageD11/pull/338
* Use xl, yl, zl for origin of diffraction calculation in PBP indexer by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/342
* Fix incorrect processed data path by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/343
* Fix strain to stress conversion in TensorMap class, better TensorMap documentation by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/345
* add forward_model for facilitating (s)3DXRD analysis by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/346
* Fix typo in dataset.py by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/347
* Various notebook quality-of-life changes, some TensorMap stuff by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/349
* Fix bug with creating PBPMap from multi-layer TensorMap by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/350
* Tiny notebook bugfixes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/353
* Methods for indexing unknowns in sinograms by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/354
* fix geometry to match module and cleanup and fit a CeO2 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/355
* Consolidated powder and SX calibration notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/356
* Allow to use another folder by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/357
* try to get docs working again by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/360
* fix version and try to get API docs by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/361
* try to build the API docs by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/362
* apidoc by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/364
* trigonalP & rhombohedralP naming by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/365
* Minor notebook bugfixes, tiny changes to refinement manager logic by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/367
* Extract chooseframe function from segmenter_gui by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/374
* TensorMap slow import 352 by CiolJegou in https://github.com/FABLE-3DXRD/ImageD11/pull/375
* plot and data separation on sorted_peak_intensity_mask by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/376
* Geometry fixes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/379
* suppress warnings for pytest on ubuntu with 3.12 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/380
* Remove dodgy ybeam by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/382
* Update version number to 2.0.5 by loichuder in https://github.com/FABLE-3DXRD/ImageD11/pull/385
* frelon_peaksearch: allow to pass `kwargs` to `process_map` in `process` function by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/386
* Move SegmenterGui utils into a separate file by loichuder in https://github.com/FABLE-3DXRD/ImageD11/pull/387
* pin pyopengl for py27 CI by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/388
* make sandbox importable closing 255 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/389
* add forward_projector, grainmaps and updates with forward_model etc to forward compute by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/393
* small fixes with peak merging for forward_projector by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/394
* frelon_peaksearch process function split into two functions by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/396
* created a logic for filter_peaks_by_phase in peakselect.py file by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/398
* Initial 3DXRD workflow Specification at /docs/ewoksrst /*.rst and respective .md and README.md at /docs/ewoks_specs by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/399
* Parameterise S3DXRD notebooks by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/391
* update on do_index() function in indexing.py file by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/401
* Parameterise box-beam notebooks with papermill by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/402
* Papermill sequencing for 3DXRD and S3DXRD routes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/405
* Ensure that files are closed after reading/saving parameters by loichuder in https://github.com/FABLE-3DXRD/ImageD11/pull/408
* spot two duplicated lines in forward_projector.py by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/409
* Bugfix in `indexing.indexer.refine()` 411 by AxelHenningsson in https://github.com/FABLE-3DXRD/ImageD11/pull/412
* Notebook annoyance fixes by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/406
* ewokstask 3dxrd specification review by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/404
* updated indexer_from_colfile_and_ucell, do_index functions in indexing.py file by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/417
* mask_rings_by_ifrac now respects dsmax when choosing rings by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/416
* update on indexer_from_colfile_and_ucell function by abmajith in https://github.com/FABLE-3DXRD/ImageD11/pull/418
* unitcell read from CIF by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/419
* Better peak intensities by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/421
* Ewoks task specification review by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/420
* demo shelx refinement by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/424
* Fix 423 by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/425
* Fix 422 by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/427
* stop tracking schmidt_factor.py by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/428
* f2scan blocked series by HF by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/429
* 4D segmentation for S3DXRD scans with Frelon by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/430
* Papermill test route for f2scan data by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/431
* fix shape for 1D scans by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/432
* Fix CI and builds on numpy 2 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/433
* Fix error when saving grain with no translation by loichuder in https://github.com/FABLE-3DXRD/ImageD11/pull/434
* Add option to scale intensities by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/435
* Fix check for no scale factor by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/437
* fix the circleci build by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/442
* closes 377 metric tensor demo fit by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/443
* fixes 269 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/444
* Allow no mask (needs testing) by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/445
* Update release.yml by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/447
* Jonwright patch 1 by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/448
* update pars_conversion to account for the new version of parameters file in DCT by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/449
* Use dset.omega_for_bins for columnfiles rather than dset.omega by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/439
* Avoid memory overflow 450 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/451
* Fix wrong frelon flat/dark correction by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/454
* dataset.obincens by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/453
* correct a typo in the notebook by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/457
* label as 2.1.0 to create a branch by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/456
* slim down the distribution by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/458
* fix memory issues for large cf comparison in forward_model etc by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/459
* another issue fix - to adapt to the new pars format by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/460
* minor update with exporting xdmf (including 5 dimensional datasets, e.g. eps_sample, UBI etc) for grainmaps.py by haixing0a in https://github.com/FABLE-3DXRD/ImageD11/pull/462
* bugfixes by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/463
* put back ppc by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/464
* put back ppc by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/465
* Small bugfixes with unitcell Phases class and 7_stack_layers notebook by jadball in https://github.com/FABLE-3DXRD/ImageD11/pull/466
* typos by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/467
* 2.1.1 by jonwright in https://github.com/FABLE-3DXRD/ImageD11/pull/468
New Contributors
* kif made their first contribution in https://github.com/FABLE-3DXRD/ImageD11/pull/224
* abmajith made their first contribution in https://github.com/FABLE-3DXRD/ImageD11/pull/374
* CiolJegou made their first contribution in https://github.com/FABLE-3DXRD/ImageD11/pull/375
* loichuder made their first contribution in https://github.com/FABLE-3DXRD/ImageD11/pull/385
**Full Changelog**: https://github.com/FABLE-3DXRD/ImageD11/compare/v2.0.3...v2.1.1