Immuneml

Latest version: v3.0.3

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3.0.0a4

Alpha release
- Experimental features: generative models, clustering, dimensionality reduction
- Integrated LIgO for simulation (LigoSim instruction)
- Internally rely on bionumpy for data storage
- Major documentation updates with focus on new developers (new docs for integrating new components, minor updates to MLMethod and DatasetEncoder interfaces, scripts for automatically testing new components)
- Added functionalities for analysing antigen-binding associated motifs

2.2.5

What's Changed

* some new reports
* bug fixes in importers, encoders, and data model
* CompAIRR helper updates

2.2.4

What's new

- update and reorganize requirements
- documentation updates

2.2.3

What's Changed
* Make CompAIRR encoder more RAM efficient
* Bugfix element generator make subset
* Speed up CompAIRRSequenceAbundance encoder
* Caching speed improvement MatchedSequences/MatchedReceptors
* Bugfix: consider positive_class when making binary mapping
* Support custom import of Olga columns
* Set up LOOCV for sequence datasets
* Add manual splitting for sequence and receptor datasets
* Label mapping bugfixes


**Full Changelog**: https://github.com/uio-bmi/immuneML/compare/v2.2.2...v2.2.3

2.2.2

What's Changed

- minor updates related to versions of dependencies

**Full Changelog**: https://github.com/uio-bmi/immuneML/compare/v2.2.1...v2.2.2

2.2.1

What's Changed

* updated documentation
* minor bug fixes in ROC curve reports
* minor bug fixes in class mappings

**Full Changelog**: https://github.com/uio-bmi/immuneML/compare/v2.2.0...v2.2.1

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