Infomap

Latest version: v2.8.0

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1.0.0

⚠ BREAKING CHANGES

* **python:** Drop support for python 2
* **python:** Rename physicalId to node_id.
Remove initial partition as first argument to run, use initial_partition argument.
Start InfomapIterator.path indexing from one.
* Output header format has changed
* Ftree output format has changed to include enter flow
* Clu output now contains top modules instead of leaf modules
* Tree output is sorted on flow
* Clu module ids starts from 1 instead of 0
* Output contains name of the physical node instead of state id
* Full multilayer format require the *multilayer heading
* Remove undirdir and outdirdir, use --flow-model. Rename min-improment to --core-loop-codelength-thresh. Remove random-loop-limit. Rename tune-iteration-threshold to --tune-iteration-relative-threshold. Rename skip-replace-to-one-module to --prefer-modular-solution.
* Removed --print-state-network, use -o states
* Renamed --set-unidentified-nodes-to-closest-module to
--assing-to-neighbouring-module
* No support for *path input

Features

* **python:** Add meta info to infomap package ([a2caaf4](https://github.com/mapequation/infomap/commit/a2caaf4ff7f368c237c2752207b097028bacb900)), closes [#63](https://github.com/mapequation/infomap/issues/63)
* Add enter flow to ftree output ([bd3255e](https://github.com/mapequation/infomap/commit/bd3255e61977ce8f1d9e0babb95ec8158710e3a8)), closes [#82](https://github.com/mapequation/infomap/issues/82)
* Show entropy rate in the beginning ([f61692c](https://github.com/mapequation/infomap/commit/f61692c60c681d532f7a45b980f5041199b088b5))
* **python:** Improve Python API ([87](https://github.com/mapequation/infomap/issues/87)) ([c39cd9f](https://github.com/mapequation/infomap/commit/c39cd9f2a310a10a30e0de83dab95902e8c6aa91))
* Add -o/--output option for comma-separated formats ([a255a18](https://github.com/mapequation/infomap/commit/a255a181f109b51eed3e1cbb82bb5f73f1894dd0))
* Add meta data in output file header ([66ccc64](https://github.com/mapequation/infomap/commit/66ccc64fec74a47a92b053642d7ad5fb63b74df2))
* Add option to print parameters in json ([3a2509d](https://github.com/mapequation/infomap/commit/3a2509d28dec022d5bdd2c8b8a4a5fd87448edab))
* Allow multilayer formats without specifying -i. ([08e09f1](https://github.com/mapequation/infomap/commit/08e09f136321dcf917d0d131d57041d32c923e64))
* Allow one-sided multilayer relax limit ([a116b83](https://github.com/mapequation/infomap/commit/a116b83bcf1240a17aca12a576fe634fd3db91dd)), closes [#68](https://github.com/mapequation/infomap/issues/68)
* Begin module id from 1 instead of 0 in clu output ([2bbea5d](https://github.com/mapequation/infomap/commit/2bbea5d537ef0e68ac167d1f84acbf0888d22fb8))
* Create npm package with Infomap worker, changelog and parameters ([44dae36](https://github.com/mapequation/infomap/commit/44dae36d65e9dccd2462db330298887318bc2463))
* Output name of physical node instead of state id ([dda3277](https://github.com/mapequation/infomap/commit/dda3277a2f97152a5b5011c94e440f9bb5ee9b9b))
* Remove --skip-complete-dangling-memory-nodes ([6909f21](https://github.com/mapequation/infomap/commit/6909f21a3ebc6eb84c5bc10f6f43c1839020ba41))
* Remove support for *path input ([e7be175](https://github.com/mapequation/infomap/commit/e7be175378838b294d64390bd6f59cdc6b8a42f1))
* Rename --set-unidentified-nodes-to-closest-module ([16fdc15](https://github.com/mapequation/infomap/commit/16fdc155d2d1fefbb22af1305f7ae7efcd1f06f4))
* Simplify command line interface ([f537132](https://github.com/mapequation/infomap/commit/f5371328e63d761ccaf6ee1cdce543ced80fe25c))
* Sort tree on flow ([6e27858](https://github.com/mapequation/infomap/commit/6e278584c45367145f57ce6323f6a8a9c2d64ffe)), closes [#71](https://github.com/mapequation/infomap/issues/71)
* Write top modules to .clu, not bottom level ([1e16a3c](https://github.com/mapequation/infomap/commit/1e16a3ccdf15ee6155a22d8d0cd4bc6ebfdeb94f))


Bug Fixes

* **js:** Add missing this in error handler ([7345cdf](https://github.com/mapequation/infomap/commit/7345cdff8aa2b362df9d6522960fb992f5634f6e))

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