Intron-retention-utils

Latest version: v0.6.3

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- Optimized simple_count function
- Add pass_bam_filt option in simple count function

- Add IR_Posivite_Max_Overhang column to allele_count function

- limit the number of reads to check in allele_count function.

- Python3 compatibility

* Add logger
* Abolished --grc argument in simple_count function

* Modify intron retention class name

Has known vulnerabilities