Iohub

Latest version: v0.1.0

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0.1.0

The first stable release of iohub. We only include source code download on GitHub since iohub is pure Python. The wheels are hosted on PyPI.

This release supports API and CLI for the following formats:

**Read**

- OME-Zarr (OME-NGFF v0.4)
- Micro-Manager TIFF sequence, OME-TIFF (MMStack), and NDTiff datasets
- Custom data formats generated by Biohub microscopes
- Falcon (PTI)
- Dorado (ClearControl)
- Dragonfly (OpenCell OME-TIFF)
- Mantis (NDTiff)
- DaXi (OME-TIFF)

**Write**
- OME-Zarr

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Note: With v0.2.0 we plan to include breaking API changes as proposed in https://github.com/czbiohub-sf/iohub/pull/132.

0.1.0rc0

Release candidate for 0.1.0.

What's Changed
* Support MM 2.0.1 for single page TIFFs by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/179
* Enable XYZ chunking at conversion by ieivanov in https://github.com/czbiohub-sf/iohub/pull/178
* Better NDTiff reading when the first position is missing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/190
* Fix for when ChNames key is not available by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/191
* Added option to not check copied data by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/192
* Fix product integer overflow by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/193
* OpenCell reader extension by ieivanov in https://github.com/czbiohub-sf/iohub/pull/197
* Extend HCS label parsing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/189
* Scaling chunk size according to pyramid factors by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/201
* Modified fluorophore color code by ieivanov in https://github.com/czbiohub-sf/iohub/pull/202
* Update documentation and metadata by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/203
* Save ndtiff image plane metadata per position by ieivanov in https://github.com/czbiohub-sf/iohub/pull/204
* Bump supported Python versions by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/200


**Full Changelog**: https://github.com/czbiohub-sf/iohub/compare/v0.1.0dev5...v0.1.0rc0

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