Iohub

Latest version: v0.1.0

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0.1.0

The first stable release of iohub. We only include source code download on GitHub since iohub is pure Python.

This release supports API and CLI for the following formats:

**Read**

- OME-Zarr (OME-NGFF v0.4)
- Micro-Manager TIFF sequence, OME-TIFF (MMStack), and NDTiff datasets
- Custom data formats generated by Biohub microscopes
- Falcon (PTI)
- Dorado (ClearControl)
- Dragonfly (OpenCell OME-TIFF)
- Mantis (NDTiff)
- DaXi (OME-TIFF)

**Write**
- OME-Zarr

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Note: With v0.2.0 we plan to include breaking API changes as proposed in https://github.com/czbiohub-sf/iohub/pull/132.

0.1.0rc0

Release candidate for 0.1.0.

What's Changed
* Support MM 2.0.1 for single page TIFFs by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/179
* Enable XYZ chunking at conversion by ieivanov in https://github.com/czbiohub-sf/iohub/pull/178
* Better NDTiff reading when the first position is missing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/190
* Fix for when ChNames key is not available by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/191
* Added option to not check copied data by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/192
* Fix product integer overflow by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/193
* OpenCell reader extension by ieivanov in https://github.com/czbiohub-sf/iohub/pull/197
* Extend HCS label parsing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/189
* Scaling chunk size according to pyramid factors by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/201
* Modified fluorophore color code by ieivanov in https://github.com/czbiohub-sf/iohub/pull/202
* Update documentation and metadata by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/203
* Save ndtiff image plane metadata per position by ieivanov in https://github.com/czbiohub-sf/iohub/pull/204
* Bump supported Python versions by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/200


**Full Changelog**: https://github.com/czbiohub-sf/iohub/compare/v0.1.0dev5...v0.1.0rc0

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