Kleborate

This release includes updates to beta-lactamase SHV genotyping (including novel alleles, mutation tracking, and improved assignments to wildtype/ESBL/inhibitor resistant classes), based on the results of the KlebNET AMR Geno-Pheno group.
(It is the same as v2.4.0, but also fixes the SHV unit tests which were not updated for v2.4.0)

This release includes updates to beta-lactamase SHV genotyping (including novel alleles, mutation tracking, and improved assignments to wildtype/ESBL/inhibitor resistant classes), based on the results of the KlebNET AMR Geno-Pheno group.

This release fixes the version mismatch between the release and running `kleborate --version` (see https://github.com/katholt/Kleborate/issues/68, thanks kapsakcj and singuyenmai), but is otherwise identical to the previous release.

This release fixes some failing [unit tests](https://github.com/katholt/Kleborate/tree/master/test) (see #67, thanks kapsakcj), but is otherwise identical to v2.3.0.

Changes since v2.2.0 include:

- Updated virulence alleles/profiles
- Change in sequence of iucA alleles with length ~1791bp to ~1725bp; see note in Wiki (Typing available in Kleborate > Acquired Virulence loci > Aerobactin and Salmochelin) for more details
- Retirement of iucA_48, iucA_49 and iucA_52
- Retirement of AbST 70, 82, 83

Bug fixes:
- Amended the mismatched antibiotic class for 3 entries in CARD_v3.1.13.fasta file to match CARD_AMR_clustered.csv, which can cause a crash; tet(X1), tet(X5), tet(X6) incorrectly assigned as 'Tet', amended to 'Tgc'. Thanks learithe and nquynh8991