- fixed memory leak when monomorphic variants are present
1.1.1
- sped up calculating linkage disequilibrium - don't calculate confidence intervals - avoid creating nested vectors for extra speed - use char arrays internally for extra speed - use faster set comparison to find major and minor alleles
1.0.7
- include phase info, even for variant pairs without different haplotypes
1.0.6
- fixes using haploid genotypes - fixed bug getting ploidy on chrX - avoid error with missing genotypes
1.0.4
- now can determine ploidy state for site_ld and region_ld - now can build on macosx